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CGTGGGGAAATTTGCATCAGAGGGGACACCTTGTTCTCGGGATACTACAAGCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcggtccctgttccagtattcctccagtgtctgatcggacgtgtccatgtcagcatcactgtgagtcaagaaaatgtcaagggaaagaaaatgt...
species | Zea mays |
transcript | GRMZM2G152127_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|33096859|gb|CF056819.1|CF056819
genomic: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: GAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|86470254|gb|DY236624.1|DY236624
genomic: GAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|33770959|gb|CF273253.1|CF273253
genomic: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|74246154|gb|DT654068.1|DT654068
genomic: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|74239652|gb|DT647566.1|DT647566
genomic: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: TCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCAEST: gi|211444856|gb|FL116921.1|FL116921
genomic: TCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
EST: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAG GAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
genomic: GCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcgg ... tttactgcagGAGACATTGGTGAGTGGCAGTCTGACGGAAGCATGAAGATCATTGACCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGGGAAATTTGCATCAGAGGGGACACCTTGTTCTCGGGATACTACAAGCGAGAGGACCTAACCAAAGAAGTCTTGGTCGATGGCTGGTTCCACACAGgtaccatcggtccctgttccagtattcctccagtgtctgatcggacgtgtccatgtcagcatcactgtgagtcaagaaaatgtcaagggaaagaaaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaaa