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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAGAAGGATGGTTAAATCATGGTTGAAGACTGCTTCTGGTCTTAAAAAGCAGCAGTTCGATATTCAGCAACAAGCATTGAAACTTACTGCAAATAGgtcagaatttctataacaaagataagtatgtctgctagtattccaccagtatgagtaataagtttctgactcagtctttaatgctcgtgctccagcatgtatggttgcttgggcttttccaactccag

Basic information

species Zea mays
transcript GRMZM2G149802_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 15
AGAGGAGAAGGATGGTTAAATCATGGTTGAAGACTGCTTCTGGTCTTAAAAAGCAGCAGTTCGATATTCAGCAACAAGCATTGAAACTTACTGCAAATAGgtca--gaatttctataacaaagataagtatgtctgctagtattccaccagtatgagtaataagtttctgactcagtctttaatgctcgtgctccagcatgtatggttgcttgggcttttccaactccag
|||||||||| ||||||||||||||| | ||||||||||||||||| |||| ||||||||| || || || || ||||| ||||| ||||| |||||||||| |  |||  | ||| ||||| || ||    | | || | |||   |||| || | |  | ||   || ||  |  ||||||  ||| || | |||                                 
AGAGGAGAAGAATGGTTAAATCATGGCTTAAGACTGCTTCTGGTCTCAAAAGGCAGCAGTTTGACATCCAACAGCAAGCTTTGAAGCTTACCGCAAATAGgtaaatgaaaatttatgacaaacattagctattatacttggatttgtccagaataattggtgagg--ctaacctaccctttaactctcatggttcag---------------------------------

upper sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 16
AGAGGAGAAGGATGGTTAAATCATGGTTGAAGACTGCTTCTGGTCTTAAAAAGCAGCAGTTCGATATTCAGCAACAAGCATTGAAACTTACTGCAA-ATAGgtcagaatttctataacaaagataagtatgtctgctagtattccaccagtatgagtaataagtttctgactcagtctttaatgctcgtgctccagcatgtatggttgcttgggcttttccaactccag
                          |  | | ||||||  | | ||  ||  |    |||  ||    ||| ||  ||     | |||| | ||    | || ||||  ||| ||       | || | ||    | | |    |  |  | ||  || ||   | |    ||   | |  || | | | |  |  ||||    |    |   || || ||       
------------------------CATGTATGGCTGCTTGGGCTTTTCCAATTCCA-GGTTTTATGCAAAGCCACTTGCT---GAGCTTATTACACTGCAAgtgagaacatctttactcttcctcagaa-gtaaattcgaaa---agaaaaaagaaaaagaaaaatgttgtacaag-tatgctggttgcgatt-aatatgtgctatgatgt---ctctttcag------