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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcag

Basic information

species Zea mays
transcript GRMZM2G146463_T03
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88754954|gb|DY539095.1|DY539095
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|71443279|gb|DR824329.1|DR824329
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|86465787|gb|DY232160.1|DY232160
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78113278|gb|DV531670.1|DV531670
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|86466262|gb|DY232634.1|DY232634
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|5006127|gb|AI712189.1|AI712189
EST:     ACGTGGGCATCCGCCGCGGCGTCGCCGTGCAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|71443417|gb|DR824467.1|DR824467
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|50334851|gb|CO529977.1|CO529977
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|91050985|gb|EB161403.1|EB161403
EST:     ACGTGGGCATCCGCCCCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60357458|gb|DN224431.1|DN224431
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|91874598|gb|EB404555.1|EB404555
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60338146|gb|DN205119.1|DN205119
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|74238711|gb|DT646625.1|DT646625
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|71318125|gb|DR795824.1|DR795824
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|91054334|gb|EB164752.1|EB164752
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|89763955|gb|DY690933.1|DY690933
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|149055655|gb|EE156360.2|EE156360
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78080807|gb|DV509219.1|DV509219
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|71430639|gb|DR811689.1|DR811689
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|50330298|gb|CO525424.1|CO525424
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60394257|gb|DN227127.1|DN227127
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78073768|gb|DV502202.1|DV502202
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78075208|gb|DV503642.1|DV503642
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCTCCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|211420211|gb|FL465092.1|FL465092
EST:     ACGTGGGCATCCGCCGCGGCGTCGCCGTGCAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78088430|gb|DV516823.1|DV516823
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|89763171|gb|DY690487.1|DY690487
EST:     ACGTGGGCATCCGCCCCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60353667|gb|DN220640.1|DN220640
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG