1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GCTTCATGAGATCAACGAACGTGTCCGGACTGGGCTATGGGTTGGCGATTGTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcatttatggatagagtgctttcatgtcataaccatttcatattttcatgtgtta
species | Zea mays |
transcript | GRMZM2G141587_T05 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|18963894|gb|BM660690.1|BM660690
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|67013287|gb|CO442036.1|CO442036
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTC-TGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|18384433|gb|BM417632.1|BM417632
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|211344820|gb|FK991758.1|FK991758
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: TTTCATCTACAATAATTCTTCATGGCGGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|18649807|gb|BM498626.1|BM498626
genomic: TTTCATCTACAATAATTCTTCATGGCG-TCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|211344819|gb|FK991757.1|FK991757
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|21809537|gb|BQ667855.1|BQ667855
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTG-GTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|89106141|gb|DY576358.1|DY576358
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|18649903|gb|BM498722.1|BM498722
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATEST: gi|18384334|gb|BM417533.1|BM417533
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
EST: GTTTCATCTACAATAATTCTTCATGGTGTCTTAATTACTGTGTAGGAGGA GAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
genomic: GTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagtt ... tcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCATGAGATCAACGAACGTGTCCGGACTGGGCTATGGGTTGGCGATTGTTTCATCTACAATAATTCTTCATGGCGTCTTAATTACTGTGTAGGAGGAgaggtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcatttatggatagagtgctttcatgtcataaccatttcatattttcatgtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA