Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGGGGAAAATCAAAGGGACAAGGAACCTGAAATGTTCTCATTGTTACTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgactttgtgcagtgactactttgacacaacaactgcttgcctagtacataagttttgctcatgttttgagaatacaactgcttgctagcacata...

Basic information

species Zea mays
transcript GRMZM2G136296_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g32350.1 (Oryza sativa), 5'ss of exon 15
TTCTGGGGGAAAATCAAAGGGACAAGGAACCTGAAATGTTCTCATTGTTACTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtg--------------actttgtgca--gtgactactttgacacaacaactgcttgcctagtacataagttttgctcatgttttgagaatacaactgcttgctagcacata---------------------------------------------------------------------------------
|||||| ||||| || ||||||||||| ||  ||| | |||| |||||||| || ||||| || ||||||||||  ||||| ||||||||||||||||||||| |||              || || || |  |||   |  || |   |      | ||  ||  | ||||   |    |||  | |  |   |||      |||||      |                                                                                  
TTCTGGTGGAAAGTCCAAGGGACAAGGCACTGGAACTATTCTGATTGTTACACTGGTTGACGCAGAGACAGAAACCAGCATCAATGCTACCATGCTTGAGgttcgtgctacttgctacttaacattatgaattgtggtgatcttaaattagttgtcggttagcttctgcatagtctgctgtcacatatgaatgctactcaacattgcttctgtttgagattgaaggctgcttgcaaactagtcacagagatatgtgaaattgtcttcgttgctaatattcccattctgtttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9461359|gb|BE453694.1|BE453694
EST:     AGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: AGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|18163487|gb|BM333326.1|BM333326
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGA
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|67017261|gb|CO446010.1|CO446010
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|4775850|gb|AI664855.1|AI664855
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|60396449|gb|DN229318.1|DN229318
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|211435102|gb|FL442353.1|FL442353
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|32847083|gb|CD986764.1|CD986764
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|211269150|gb|FL294986.1|FL294986
EST:     CAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|37393345|gb|CF633935.1|CF633935
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|40336444|gb|CK370514.1|CK370514
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|78025893|gb|DV494280.1|DV494280
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|5607972|gb|AI901639.1|AI901639
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|32944015|gb|CF048834.1|CF048834
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATACTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|29945603|gb|CB815724.1|CB815724
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|40334952|gb|CK369022.1|CK369022
EST:     AGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: AGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|20802346|gb|BQ293396.1|BQ293396
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTGCCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|211486828|gb|FL010663.1|FL010663
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|108953432|gb|EC364740.1|EC364740
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|33093747|gb|CF053741.1|CF053741
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGGGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|37382079|gb|CF627962.1|CF627962
EST:     AGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: AGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|5455714|gb|AI833404.1|AI833404
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|15080370|gb|BI389038.1|BI389038
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|32911048|gb|CF015860.1|CF015860
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
EST: gi|60357472|gb|DN224445.1|DN224445
EST:     CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAG                         GAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG
genomic: CTCTTGTTGATGCGGAGACAGAAAGTAGCATAAATGCTACCATGCTTGAGgtttgtgact ... gcatctacagGAAGGCCTTGCTCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGG