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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag

Basic information

species Zea mays
transcript GRMZM2G135283_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 12
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATA---TCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
        |||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||||| |   | || |||  |  | | | | |     || || | | | |     | |||| |  | ||   |    ||      | |   | | ||   ||     || ||| |     ||   | | |                            
--------GCCATGATGTGGAGGAATATGCAAAACAGTTCCCCACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAAGAAACTTTGAATGGAACAGCAAGgtattgtcctg-acagataaattggc-tccatttttttttagcatgctgcatgcagtatattagttgcctaggccttggct-ccgatcatgaaccatgtttac---------------------------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATG------ACAAGgtatgctctat-ctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
       |||| |||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||  ||||||||  ||||||| | | |   | |        |  ||||||||  ||| |||| | |  |||     || |  ||||| ||  |   | | |  ||     |  ||   ||  |  |    ||    | |   |  |                                    
------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgttt-gtcccatattggttgacaaggtcatagacaagaggtagttagcc-----------------------------------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 15
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacag-tagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
          |||||||||||| || || || || | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |   |||| |   ||  | | |  |       | | ||   |                                               
CTGAGATTGCAAAGCTTCGCCACGAGGTGGAAGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaaa--gtagatgagtttgataagacagcaatcacaacc-------------------------------------------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 15
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATAT----CTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaag-ggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
    || |||||||| || ||||| | |||||||||||||||||| ||||| ||||||||||| || |||||||| ||  | | |  |     |  | |||||||||||    | || || |  |   |      ||   || | |||      |  |    |||  ||  |  | |    |     | ||   | |    || | |                                 
----CTCCGCCATGAGGTCGAGGAGTATGCAAAACAATTCCCAACTATTGGTTTTGAGAAAGAAACAATGAAATATAAAGATTGAAGTAGTCTTTAAGGACAAGgtatgtcaca-ctctggatcgcgaaacagacat---ttgtgatagttgtcattttgtctgtagaattgaagcaataaaatcacatctagagatgaggtattgga--------------------------------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgc---acggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
        |     ||||   ||   ||||||  ||    | ||      |   |      |  || |||   | | ||  || |  ||   ||  |   | ||||   | ||| ||     |||  ||  | ||||||    |||   ||  |  |   ||    || |       | ||                                                         
--------GTTTCTATGTTT-GGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcggt-ctagccctcacctccaaat--ctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag---------------------------------------------------------

upper sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag
          ||||||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |       ||  ||  | | |  |       | | ||   |                                               
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaga-gtagatgagcttgataagacagcaatcacaacc-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113703934|gb|EE681438.1|EE681438
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|148973318|gb|EE024403.2|EE024403
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6194529|gb|AW146633.1|AW146633
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGATGAGGTCACTCTTCTTGCA
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-ATGAGGTCACTCTTCTTGCA
EST: gi|60352787|gb|DN219760.1|DN219760
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|67017024|gb|CO445773.1|CO445773
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60344488|gb|DN211461.1|DN211461
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|108953686|gb|EC364842.1|EC364842
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGACGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|71299009|gb|DR785497.1|DR785497
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|32867520|gb|CF007202.1|CF007202
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60354435|gb|DN221408.1|DN221408
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60343439|gb|DN210412.1|DN210412
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|40336482|gb|CK370552.1|CK370552
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|113700941|gb|EE678445.1|EE678445
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|32850232|gb|CD989913.1|CD989913
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6102053|gb|AW126523.1|AW126523
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|67013913|gb|CO442662.1|CO442662
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|37393418|gb|CF633973.1|CF633973
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|14204327|gb|BG838004.1|BG838004
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|211502770|gb|FL432440.1|FL432440
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGAAG                       
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGAC---AAGgtatgctcta ... tttgcaga
EST: gi|5804699|gb|AI979669.1|AI979669
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6449712|gb|AW181252.1|AW181252
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|148945830|gb|EC891119.2|EC891119
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAAGGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-ATG-AGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|37391313|gb|CF632898.1|CF632898
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|211373640|gb|FL261169.1|FL261169
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGAAG                       
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGAC---AAGgtatgctcta ... tttgcaga
EST: gi|211373639|gb|FL261168.1|FL261168
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60357206|gb|DN224179.1|DN224179
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGAT
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGAT
EST: gi|89249961|gb|DY621747.1|DY621747
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5915216|gb|AW052857.1|AW052857
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCCC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60353152|gb|DN220125.1|DN220125
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 30

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 30

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 47

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 43

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC