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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGACgtatgaattcttatgtaaattccattaacttctcaggtaaatgactatctgaattttttcag

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 5'ss of exon 16
lower sequence: PP1S8_288V6.1 (Physcomitrella patens), 5'ss of exon 16
GTGACCATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGACgtatgaattcttatgtaaat-tccattaacttctcaggtaaatgactatctgaattttttcag----------------------------------------------------------------
||    ||||| || |||||||||||||||||||| |||||||| || || || ||||| | |  |||  |      || | | | |  |   |||| |    |||||| |   |                                                                    
GTTGTTATTGTGGTGGTTGCTGTGCCTGAGGGACTTCCATTGGCCGTCACGCTCACgtagggacactttcgagtccctctaatcaatgatagtgtaactttgaatctgagtagctgttacttgtatcagtcaatttgtattcaaaatgaagtctaatgtttttttgaacacgtttcaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443249|gb|DR824299.1|DR824299
EST:     ATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGAC                         GCTTGCATATTCCATGAAAAAGATGATGCGAGACAAAGCTCTG
genomic: ATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGACgtatgaattc ... attttttcagGCTTGCATATTCCATGAAAAAGATGATGCGAGACAAAGCTCTG
EST: gi|31350151|gb|CD434508.1|CD434508
EST:     ATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGAC                         GCTTGCATATTCCATGAAAAAGATGATGCGAGACAAAGCTCTG
genomic: ATTGTAGTTGTTGCTGTGCCTGAGGGACTCCCATTGGCAGTAACACTGACgtatgaattc ... attttttcagGCTTGCATATTCCATGAAAAAGATGATGCGAGACAAAGCTCTG