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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag

Basic information

species Zea mays
transcript GRMZM2G128877_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 15
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag
|||| |    ||||||| |   ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||| |||||||||| |||||||||  ||||  | | | |  |    |||||||  |    ||| ||| |||| ||  || | | ||  | |    ||  | ||  |   |  |||| |    |                                                               
TGAGCCGCACTATGAGAGGGAAGATCCAGATTTCATTGATATTAGAACAAAGGCACGTGAGGTGTTGCAGAGGGAAGATGATTTAAATGAAATAGTGCAGgtactattt--tgagccttgtgaatatttactctcctggaattccacgatggtttgacctgtcttattgaa---gttaccttttctcatactgtcgtatccctcc------------------------------------------------------------

upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 16
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag
|||  ||||||||||| | |||||||||||||| ||  | ||||||||||| || ||||| ||  |||| ||||| || || || ||||||||||| |||||  |  ||  |  | ||   |     ||  ||||      ||     ||||    |   ||| ||||     |  || |||   || | ||    | |  | | |||||                                                       
TGAAACCTTTTATGAGCAATTTGATCCAGATTTTATCAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGGGAAGATGACCTGAATGAAATTGTTCAGgtgtgtgttctt--ttattggtaatgattgtttgc------taatgaaatgtccccatgctttctcctag---tacgggattaagatttgttcagcttcttc-tgcaaatag-----------------------------------------------------

upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 16
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgc--acaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag
|||  ||||||||||| | |||||||||||||| ||  | ||||||||||| || ||||| ||  |||| || || || || || ||||||||||| |||||  |  ||  |  | ||   |     ||  ||||  |  |||| ||   ||| ||   | |  |  |   |||| |     ||    |  ||   ||   ||                                                                
TGAAACCTTTTATGAGCAATTTGATCCAGATTTTATAAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGgtgtgtgttctt--ttattggtaatgattgtttgctaatgaaatgcccccatgctttctcctagta-cgggattaagaattgttcagcttcttctgcaaatag----------------------------------------------------------------

upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 16
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag
 || || || ||||||||||| ||||||||||||||  | || |||||||| ||  | ||||||||||||||||| |||||||| ||||||||||| |||||| |        |||| ||| ||| | ||   | |   | |    |||    |||||| || |  |       |   |  |   |  |||||      ||   |  || || ||| ||                                              
GGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGgtatg-------tatca-cttatccttgtataagtatctattgtggtgaccaatgaactcttgtctc------agcaaccctaatacattttg-----aaggggttgaacgataatctt----------------------------------------------

upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 16
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaacttttt-ttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag
 || || ||||||||| | | |||||||||||| ||  | || |||||||| || ||||||||| |||| || || || || ||||||||||||||||| ||| | ||| ||| | | |||||   ||| ||   ||| |     ||||  |   ||       || |  ||  |||  ||  | |||| |   |                                                                       
GGAATCTTTTTATGAGCAATATGATCCAGATTTTATCAACATCAGGACAAAGGCTCGTGAGGTGCTGCAAAGAGAAGATGACCTAAATGAAATTGTGCAAgtatgttttcctccttagcttttat-ttttctattacacagctagatgagatagaaatgagccatttcccatagtgttccaa-gacatgatacttgggagga----------------------------------------------------------------

upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 12
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 16
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtagga---------tttg---ctcatcatcttttcca--tttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgca-gcattcaaatgaaa--atttttatcaatagcactccatt--gtcttgattgt--gacttccgtgtgtt-cag
|||    ||||||||||| |||||  | ||||| ||||  ||||| ||||||||  | |||||||||||| | || || ||  |||||||||||||||||||| |          ||||   | |||  |  ||||    ||||| ||       | |    ||| |   | |||| |   || ||   |    |     |||||   | |    | ||||    |||   || || |  ||      |||||   | | |   |||   || |   || ||| |||
TGAAGGTTTTTATGAGAACTTTGACTCTGATTTTATTGGGATTAGAACAAAAGCTAGAGAGGTGTTGCAGCGAGAAGATGACTTAAATGAAATTGTGCAGgtaaggcaaatgcagtttgtgccacattgttctttcttgttttacatgtttctggt-cagaaatgctcatatttttatatgttttttgtttatttatatttgtttcagcttttgtgaattccgtcgaatttatcttaactaacgtttttccatctggccattcctgtctaacctttctgggttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929207|gb|CF034019.1|CF034019
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|60338201|gb|DN205174.1|DN205174
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|13149764|gb|BG320086.1|BG320086
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32831320|gb|CD970998.1|CD970998
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32928400|gb|CF033212.1|CF033212
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32837774|gb|CD977452.1|CD977452
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|74035379|gb|DT535868.1|DT535868
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAAGAC
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGA-GAC
EST: gi|5296280|gb|AI783050.1|AI783050
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5846764|gb|AI999847.1|AI999847
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32939925|gb|CF044744.1|CF044744
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|211532168|gb|FL123442.1|FL123442
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|211152801|gb|FL123511.1|FL123511
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTNAAGAWGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|211154401|gb|FL123520.1|FL123520
EST:     AGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATNGAA-TTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAAT-GAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5847131|gb|AW000210.1|AW000210
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|33092495|gb|CF052489.1|CF052489
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5846817|gb|AI999900.1|AI999900
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5846863|gb|AI999946.1|AI999946
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|67040096|gb|CO466351.1|CO466351
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|149076737|gb|EE165383.2|EE165383
EST:     AGGTGTTGCAGAGGGGAGGAGGATCTAAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATTTGACAAGATTACACTGGAGACA
genomic: AGGTGTTGCAGA-GGGAGGACGATCT-AAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32836684|gb|CD976362.1|CD976362
EST:     AAGCACGTGAGGTGCTGCAGAGGAAGTACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|83278503|gb|DV942511.1|DV942511
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5343199|gb|AI795384.1|AI795384
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5296225|gb|AI782905.1|AI782905
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|5325051|gb|AI783242.1|AI783242
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTCGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|211156008|gb|FL123543.1|FL123543
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|32910829|gb|CF015641.1|CF015641
EST:     CGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: CGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
EST: gi|67025855|gb|CO454604.1|CO454604
EST:     AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAG                         CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA
genomic: AAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 636

TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1032

TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 837

TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 1248

TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttg ... gtgtgttcagCTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTCCTTTTATGAGAAGTTTGATCCAGATTTCATTGATATTAGGACAAAAGCACGTGAGGTGTTGCAGAGGGAGGACGATCTAAATGAAATTGTGCAGgtaggatttgctcatcatcttttccatttacttgcacaaaataccatgatgtttgaactttttttccttattatgtggcattggcatgttttgtcatgcagcattcaaatgaaaatttttatcaatagcactccattgtcttgattgtgacttccgtgtgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA