1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CGACGAGGGTCCAGACAGCAAGGCGGAGGGCGAGAAGGAAGCGGCCGTTGTTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctccggcgccctgatcgatttgcgaggcacgtacgtgaatggactgaacccttgccccttctcacgatgcag
species | Zea mays |
transcript | GRMZM2G128748_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|21088803|gb|BQ401116.1|BQ401116
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|148942754|gb|EC887780.2|EC887780
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|93282698|gb|EB674962.1|EB674962
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|67024699|gb|CO453448.1|CO453448
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|211438029|gb|FL452121.1|FL452121
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|211450784|gb|FL323034.1|FL323034
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|93282697|gb|EB674961.1|EB674961
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|211021325|gb|FL452122.1|FL452122
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|211166775|gb|FL323679.1|FL323679
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|74242219|gb|DT650133.1|DT650133
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|37379457|gb|CF626473.1|CF626473
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAGEST: gi|211516692|gb|FL308813.1|FL308813
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
EST: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAG GTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
genomic: TTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctc ... cacgatgcagGTTGCAGCGAGCTTCGCCGCCGAGGGTGCCGTGATGAACGAGCTCAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGAGGGTCCAGACAGCAAGGCGGAGGGCGAGAAGGAAGCGGCCGTTGTTGACCTTAGGCCACTGACGATGGAAGACCTGAGGCAGGCAAAGAACCAGgtgagtgctccggcgccctgatcgatttgcgaggcacgtacgtgaatggactgaacccttgccccttctcacgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC