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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTTTATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaactttacagttggaccttagcaatttcaatcaaaccttgatatagtgcatatattctactttcatgtgcgaataaatagtcttacattgagcaactgtctgacacttcaaagttgttaacatcttttttcatttcag

Basic information

species Zea mays
transcript GRMZM2G128114_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128114_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 16
GAGCAAATGTCATGCTAGGTGGTAAAAGACACAGCCTGGGGATGTCATTTTATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaactttacagttggaccttagcaatttcaatcaaaccttgatatagtgcatatattctactttcatgtgcgaataaatagtcttacattgagcaactgtctgacact----tcaaagttgttaaca-tcttttttcatttcag
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GAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCTATGAGCCAACTGTAGTAGGGAACGTCAGCAATGATATGCTTCTTTTCAGgtagggttcaaa-------------aattgtgatttgaccttattttagtgcatatgctttaccttcatg--cgaagaaatgttcaatcattgagaaattctttgacatccttgttctagtttctaacaatcacatttggcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194717149|gb|FK934302.1|FK934302
EST:     TATGAGCCAACTGTAGTAGGGAATGTCAGCAACGATATGCTTCTTTTCAG                         AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCGTTCAAAACTGAGGA
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaacttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
EST: gi|84980453|gb|DW530802.1|DW530802
EST:     TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG                         AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaacttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
EST: gi|78107120|gb|DV525538.1|DV525538
EST:     AATGTCAGCAATGATATGCTTCTTTTCAG                         AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
genomic: AATGTCAGCAATGATATGCTTCTTTTCAGgtaaacttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
EST: gi|149000517|gb|EE037699.2|EE037699
EST:     TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAG                         AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaacttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
EST: gi|32856352|gb|CD996033.1|CD996033
EST:     TATGAGCCAACTGTAGTAGGGAATGGCAGCAATGATATGCTTCTTTTCAG                         AGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA
genomic: TATGAGCCAACTGTAGTAGGGAATGTCAGCAATGATATGCTTCTTTTCAGgtaaacttta ... ttcatttcagAGAAGAAGTTTTTGGTCCAGTTGCACCCCTTATACCATTCAAAACTGAGGA