Sequence
atgc intronic sequence ATGC exonic sequenceTCTGCCTTCAAAAGTTATATGAGAGGATTGATTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAGgtcagatgttgctttatttacatcatgttattagtaatgctgagccattggttaataataggagcaacataaaagcaatgcactggaactctggtatagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os02g49570.1 (Oryza sativa), 5'ss of exon 10
TCTGCCTTCAAAAGTTATATGAGAGGATTGATTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAGgtca--------gatgttgctttatttacatcatgttattagtaatgctgagccattggttaataataggagcaacataaaagcaatgcactggaactctggtatagt
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TCATCCTGCAAAAGCTATATGAGCGGATTGACTTCAATAAAGAAATTATATCTAAGGGTAGATATGCAGAGCTTAATGCTGCTGATCAACGCCCTTTAAGgtaacttagcacaatgttgctggagctggatgacatgaa-agcagtgcatgccaattgtcgtatgat--gatctgcaattattcagtatgttttcacttttat-----
upper sequence: GRMZM2G122843_T02 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA05G07540.1 (Glycine max), 5'ss of exon 11
TCTGCCTTCAAAAGTTATATGAGAGGATTGATTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAGgtcagatgttgctttatttacatcatgttattag----taatgctgagccattggttaataataggagcaacataaaagcaatgcactggaactctggtatagt-
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TTAACCTTGGGAAACTTTCTGAGAAGATTGGCTTCAACAAAGAAATCATATCAAAGGGTAGATATGCTGAGCTCCATGCAGCTGAACAGCGTTCTTTAAGgt--aatgg-aatttgttaacgttcagttataaagttctagtggagctggagagaatattaaccagtgcaccgtaccatc--tgatatctaactgtgaggcactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211407279|gb|FL347388.1|FL347388EST: TCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAG ACCAGACGAGGCAGAGCTTTTTGAAAAGTCAGCACAAAATGCTTATGCATT
genomic: TCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAGgtcagatgtt ... atttccacagACCAGACGAGGCAGAGCTTTTTGAAAAGTCAGCACAAAATGCTTATGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGCCTTCAAAAGTTATATGAGAGGATTGATTTCAATAAAGAAATTATATCCAAGGGTCGATATGCTGAGCTTAATGTTAATGATCAACGACCTTTAAGgtcagatgttgctttatttacatcatgttattagtaatgctgagccattggttaataataggagcaacataaaagcaatgcactggaactctggtatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT