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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGGACTTGACTCTGTTGAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacggtattatcatttgtttttgaagatgttaacccactttctagctctgatttacatctatttattcatgacgcacatgttcctttag

Basic information

species Zea mays
transcript GRMZM2G120302_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120302_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 15
GTTGGGGACTTGACTCTGTTGAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaaga----gacggtattatcatt--tgtttt--tgaagatgtt-aacccactttctagctctgatttacatctatttattcatgacgcacatgttcctttag
 |||| |||||  || |||||||||| ||||| |||||||| |||||||| ||||  |||||||||||||||||||     |  || | |  |||  || |||  | ||  | || || |||     ||  ||  || ||    || | |    |  |  ||||    ||| ||
ATTGGTGACTTATCTTTGTTGAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccataagagtctcactatttctgctttggtaaaagtattcaatccaacccgtatgtccaatgtaa---tagtcaccttttgc-tacattgctcttcag

upper sequence: GRMZM2G120302_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 15
GTTGGGGACTTGACTCTGTTGAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacggtattatcatttgtttttgaagatgttaacccactttctagctctgatttacatctatttattcatgacgcacatgttcctttag
|| |  |||||| | |||||| ||||||| || |||||||||||||||||||| || || |||||||| |||||   |  | |||  ||| ||||||   || | |  |     ||| |    ||| |||  |  | |      ||     ||    | |     
GTAGCTGACTTGTCCCTGTTGCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTGgtaaataatagaattg-catatgttttgtcagttctgtatttgattttttatactggttt-tagttctgaggctatacttgactgactgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113757246|gb|DW880471.1|DW880471
EST:     GCGGAGACGCACAAATTTGAGTCTCATTATATGGACAAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTT-GTCAACCAGT
genomic: GCGGAGACGCACAAATTTGAGTCTCATTATATGGAC-AATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|33091583|gb|CF051577.1|CF051577
EST:     GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|5847476|gb|AW000555.1|AW000555
EST:     GAGAGCGGAGACACACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|6031233|gb|AW076135.1|AW076135
EST:     GAGAGCGGAGACACACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAAAGAAAGAGCTTACT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACT
EST: gi|32935186|gb|CF039998.1|CF039998
EST:     GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAACCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|32934798|gb|CF039610.1|CF039610
EST:     GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|148961815|gb|EE012596.2|EE012596
EST:     GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
EST: gi|148972938|gb|EE023964.2|EE023964
EST:     GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAG                         GAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT
genomic: GAGAGCGGAGACGCACAAATTTGAGTCTCATTATATGGACAATCTTGTAGgtaagagacg ... gttcctttagGAAATGAAAGAGCTTACTACGAGAGATCACCAATCAACTTTGTCAACCAGT