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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACAgttaagcattgccaacaacattaccttttccctttttttccttgcttgggcagccgcttcatttccttgtctattatgtttataattatccttaacatgt...

Basic information

species Zea mays
transcript GRMZM2G109987_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109987_T05 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os03g01890.1 (Oryza sativa), 5'ss of exon 15
---CTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACAgttaagcattgccaa---caacattaccttttccctttttttccttgcttgggcagccgcttcatttccttgtctattatgtttataattatccttaacatgt
   |||||| ||||||||||||||||| ||||||||   ||||||||||||  |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||   ||||||   | | ||||| || ||| ||    |  |||  ||  |    | | ||| |     |   ||    ||  | | |||  | |     
ATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGA---TTTCCCAGATGAAACTCCATTGATTTCTTCTGGCTTCCGTGTTATACCACTTGATATGAAAACAgttaagtgctgccaaattccaaattacattatccattaccctt-ttgactgttccctaggtccatatgtgctttatttgctgttgcattaatctgtgatga--

upper sequence: GRMZM2G109987_T05 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 14
CTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACAgttaagcattgc-caacaacattaccttttccct--ttttttccttgcttgggcagccgcttcatttccttgtctattatgtttataattatc-cttaacatgt
 |  |   ||||||| ||||| |||||||||||    ||||| |||||||||||||||||| ||||||| || ||  | || ||| | |||   ||| ||||||||  |||  |  |   |||    ||||  |  | | | || |||||    |     ||||  || ||   | ||    | |   ||| | | |   ||| 
TTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttaagttttgttcctctgtattttgctttctataatctctaccgtgctt---tatttttttcagctctttacatctt-cactcaagcttagcgcatgtaatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86472312|gb|DY238682.1|DY238682
EST:     GATGTGAAAACA                         GATGGTGTATCCTTTGGTAGGACGCTAGATTTGGCATCTAGTCTTGATGTG
genomic: GATGTGAAAACAgttaagcatt ... tctcatgcagGATGGTGTATCCTCTGGTAGGACGCTAGATTTGGCATCTAGTCTTGATGTG
EST: gi|50334712|gb|CO529838.1|CO529838
EST:     CTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACA                         GATGGTGTATCCTCTGGTAGGACGCTAGATTTGGCATCTAGTCTTGATGTG
genomic: CTCCATTGATTTCTTCTGGCTTTCGTGTCATACCACTTGATGTGAAAACAgttaagcatt ... tctcatgcagGATGGTGTATCCTCTGGTAGGACGCTAGATTTGGCATCTAGTCTTGATGTG