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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaattttttaaatgtaatataattagtacctccaaaaaaatatgctcgtactcctgtgtatatatatcaacttaagcaatcgcaaacttgaactttttagtaccacgtctaagttgtctctttgtcag

Basic information

species Zea mays
transcript GRMZM2G109383_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 15
AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaattttttaaatgtaatataattagtacctccaaaaaaatatgctcgtactcctgtgtatatatatcaacttaagcaatcgcaaact--tgaactttttagtaccacgtctaagttgtctctttgtcag
||||||||||| || |||||||| || |||||||||||||| || ||||||||||| || |||||||||||||||||||| ||  ||| || |  |     || |||       | |  ||    | ||    |  |||  |||| | ||||   ||    ||   |||    ||||   |||                              
AATGTTGATGCTGGAGCTGCTAAAGAACTTATGGCAAACCTTGTCAGCATGCAGTCGTCCCTTTCTGATGTTAACAAgtacgtacattgttcac-taacccatgatttagggagcgatcaa----tacttcgccagctgc-tatagaaatcagtctatttcattttaaatgaatgaataattt------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211190027|gb|FL186117.1|FL186117
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|16927237|gb|BM080306.1|BM080306
EST:     AGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|29130007|gb|CB380711.1|CB380711
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|7216825|gb|AW562947.1|AW562947
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|30088268|gb|CB886473.1|CB886473
EST:     AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|120480298|gb|EH210799.1|EH210799
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149109220|gb|EE293196.2|EE293196
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|18167299|gb|BM337138.1|BM337138
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|20508129|gb|BQ279907.1|BQ279907
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341564|gb|FL066570.1|FL066570
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATSSGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|12970130|gb|BG266829.1|BG266829
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341566|gb|FL066572.1|FL066572
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAGCAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCGGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67018536|gb|CO447285.1|CO447285
EST:     CT-ATGGCANACCTAGTA-GCATGCAGTCATCACTTTCTGATGTTAACA-                         GTTGGTCAAGGAGA-CCGGTCTGATGTTTCTGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGA
EST: gi|67025110|gb|CO453859.1|CO453859
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|213175101|gb|FM189490.1|FM189490
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGGTCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211541125|gb|FL006426.1|FL006426
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|12046898|gb|BF729037.1|BF729037
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCTCGTTTTGATGTTTCTGAAGTAGTTGCAGCTGACG
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATC-CGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACG
EST: gi|211341569|gb|FL066575.1|FL066575
EST:     AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|78180558|gb|DV551051.1|DV551051
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|213170007|gb|FM188153.1|FM188153
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67024524|gb|CO453273.1|CO453273
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32838974|gb|CD978655.1|CD978655
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341565|gb|FL066571.1|FL066571
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|60401463|gb|DN234270.1|DN234270
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32909657|gb|CF014469.1|CF014469
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149013082|gb|EE042781.2|EE042781
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|24768906|gb|CA404035.1|CA404035
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTCTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTCTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|19769326|gb|BQ034047.1|BQ034047
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAGCAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67022599|gb|CO451348.1|CO451348
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTT
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTT
EST: gi|78022451|gb|DV490838.1|DV490838
EST:     TAAGCATGCAGTCATCACTTTCGGATGTT-ACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: TAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|19769724|gb|BQ034445.1|BQ034445
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67014425|gb|CO443174.1|CO443174
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|5296227|gb|AI782907.1|AI782907
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|31354675|gb|CD439032.1|CD439032
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149014022|gb|EE043540.2|EE043540
EST:     TATGGCAACCCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: TATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|31356718|gb|CD441075.1|CD441075
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|148974650|gb|EE025448.2|EE025448
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA