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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGAGGGTTCAGTGCCCTTCTGGGAAGGTTTCTTACAACAAACGATCTGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaaaaatgttgactcatttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcag

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107696_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 5'ss of exon 11
GAAGAGAGGGTTCAGTGCCCTTCTGGGAAGGTTTCTTACAACAAACGATCTGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaaaaatgttgactcatttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcag
|| ||| |  |||| ||||||||||| || || || || |||||||| |||||| || |||||||||||| ||||||  | ||||| || ||||| ||||||  ||||||||   ||  | |  || | ||  ||  |  || |  || |||||||| |  |||  ||| |||||
GAGGAGCGTCTTCAATGCCCTTCTGGAAAAGTCTCCTATAACAAACGTTCTGACTACATTCTTTCTTTGAACATACCGTTACATGAAGCTACTAACAAAGgtgactttaaaacctttttccctgttgtattataaagttagt-gcatatatccttgacacctgtgagatatgcag

upper sequence: GRMZM2G107696_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 12
GAAGAGAGGGTTCAGTGCCCTTCTGGGAAGGTTTCTTACAACAAACGATCTGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaaaaatgttgact-catttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcag--------
||||||| | | |  || || ||||| ||||||   || || ||  |    |||    |||||||||||| ||| || || ||||||||||||||||||||||  |          || ||   || || ||     ||   | |    | | ||| || |||| |  ||||   |        
GAAGAGAAGATCCTTTGTCCGTCTGGAAAGGTTGGATATAATAAGAGGGAAGACTGTATTCTTTCTTTGAACATTCCGCTACATGAGGCAACTAATAAAGgtatatcctgttcgtctgtctatgttcctcttcctttatcgtttggcgtgtttcttaat-tttgcttaatgtttggtgatcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32787436|gb|CD939928.1|CD939928
EST:     TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG                         AGCAGCTAGAAGCTTTTA
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTA
EST: gi|71330491|gb|DR802012.1|DR802012
EST:     TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG                         AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: gi|31361116|gb|CD445473.1|CD445473
EST:     TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG                         AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: gi|20300736|gb|BQ163679.1|BQ163679
EST:     ACAACGTTCTTTCTTTGAAGCCATACCACTGCATGAGGCAACTAATAAAG                         AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
genomic: ACAACGTTCTTTCTTTG-AG-CATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: gi|44682206|gb|CK787254.1|CK787254
EST:     TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG                         AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA