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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTCAAGTCCTGAAGATTCAACAACAGTTTTGGCCAGTTTTAGGTCCAACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaacatcactagttattgaattgcataaccattatgaaacctcatagcgagaacaacttgcctggctacctttgggtttgatattagagatttgc...

Basic information

species Zea mays
transcript GRMZM2G107309_T06
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37384487|gb|CF629320.1|CF629320
EST:     AACATATGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|71449896|gb|DR830946.1|DR830946
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|211440335|gb|FL443588.1|FL443588
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GCAATGAGCTGAAGAAAAGGAAGCGTTCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|211416083|gb|FK952661.1|FK952661
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|71763326|gb|DR961263.1|DR961263
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|211183239|gb|FL432688.1|FL432688
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GCAATGAGCTGAAGAAAAGGAAGCGTTCAGGAGGAGGACCAGGGCCCTTYT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|148946012|gb|EC891307.2|EC891307
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTTTTCCATTCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|5688538|gb|AI941553.1|AI941553
EST:     AACATATGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|71445686|gb|DR826736.1|DR826736
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|149082860|gb|EE172086.2|EE172086
EST:     AACATACGCATCCCTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
EST: gi|91050278|gb|EB160696.1|EB160696
EST:     AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATA                         GTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT
genomic: AACATACGCATCACTACAGGCGCAGCAGGGGTCGGTTTCTTCCAATCATAgtgagtaaca ... atcaccaaagGTAATGAGCTGAAGAAAAGGAAGCGTCCAGGAGGAGGACCAGGGCCCTTCT