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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcag

Basic information

species Zea mays
transcript GRMZM2G107101_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107101_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g08700.6 (Oryza sativa), 5'ss of exon 14
CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcag
||  ||||||| |||||  | || |||||||| ||| |||||||||||||||||||| |||| || || ||||| || || ||||||||||||||||| ||  ||||| ||||   ||  || |  |||| | ||    || ||| |||| | | | |  || ||   | ||||||| |||  || |||||
CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAGgcatgtcc--tcttc-tctgatctcactcacgttcatgccaaacttactcat-catcatccatgatccatcatcctgactgaatcttg--atatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873510|gb|EB403467.1|EB403467
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCCACCACCATCCGCTGCCTTTCTC
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTC
EST: gi|78180470|gb|DV550843.1|DV550843
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|16921389|gb|BM075127.1|BM075127
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAGATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|8516555|gb|BE123280.1|BE123280
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211222361|gb|FL433496.1|FL433496
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18173100|gb|BM348488.1|BM348488
EST:     GGGNAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211125421|gb|FL376738.1|FL376738
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18167955|gb|BM337795.1|BM337795
EST:     CAGGTTTATCAGTGGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: CAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|16922290|gb|BM075508.1|BM075508
EST:     AGTTGCAGATGGTCTTTCAAATGTGCTGAAG                         TGCCGTCTATCAACCGCCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: AGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211444136|gb|FL303933.1|FL303933
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18170800|gb|BM340640.1|BM340640
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|110522208|gb|EE026392.1|EE026392
EST:     ATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: ATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|8273112|gb|BE012205.1|BE012205
EST:     TTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: TTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18176877|gb|BM351810.1|BM351810
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18175701|gb|BM350918.1|BM350918
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|30087796|gb|CB886002.1|CB886002
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|37379863|gb|CF626699.1|CF626699
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|60352308|gb|DN219281.1|DN219281
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211446239|gb|FL303934.1|FL303934
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|60349242|gb|DN216215.1|DN216215
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|6827225|gb|AW330868.1|AW330868
EST:     GGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATNCTGCTGAAG                         TGCCGTCTATCAACCACCATCCG-TGCCTTTCTCACCCA-GTGCACACGT
genomic: GGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAAT-CTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGT
EST: gi|93283882|gb|EB676146.1|EB676146
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18174631|gb|BM350019.1|BM350019
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|28986264|gb|CB351049.1|CB351049
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|17929955|gb|BM266915.1|BM266915
EST:     GGGNAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|17931988|gb|BM268948.1|BM268948
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18170587|gb|BM340427.1|BM340427
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18163990|gb|BM333829.1|BM333829
EST:     TTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: TTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|17930525|gb|BM267485.1|BM267485
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|113701581|gb|EE679085.1|EE679085
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|116818296|gb|EC861304.1|EC861304
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|12046987|gb|BF729126.1|BF729126
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|113703434|gb|EE680938.1|EE680938
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|78105059|gb|DV523477.1|DV523477
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18168523|gb|BM338363.1|BM338363
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211533313|gb|FL400718.1|FL400718
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCA
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCA
EST: gi|211411984|gb|FL447509.1|FL447509
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211444132|gb|FL303929.1|FL303929
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|17929970|gb|BM266924.1|BM266924
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|32845254|gb|CD984935.1|CD984935
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|37375278|gb|CF624065.1|CF624065
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|18165061|gb|BM334906.1|BM334906
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|8103030|gb|AW927697.1|AW927697
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|30087797|gb|CB886003.1|CB886003
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 372

CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 193

CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 551

CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcag

- - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG