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AAACCATATAGATCAAATGTCAATTGATGATATCGAGCAGATGGTTAATAGGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaaaaacaatctacttttatttcaggcctgtaacatatagctaagcatgtcgattgcattaacattctatttccttgtgctctcag
species | Zea mays |
transcript | GRMZM2G100639_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|8930063|gb|BE224901.1|BE224901
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|37392558|gb|CF633531.1|CF633531
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|32907868|gb|CF012681.1|CF012681
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACCAGATGGTGTTGTTCGAATCEST: gi|8930064|gb|BE224902.1|BE224902
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|78024212|gb|DV492599.1|DV492599
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|40334809|gb|CK368879.1|CK368879
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|9952350|gb|BE638933.1|BE638933
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|37378279|gb|CF625824.1|CF625824
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|32907869|gb|CF012682.1|CF012682
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|33097239|gb|CF057199.1|CF057199
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|6021880|gb|AW066808.1|AW066808
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|6654282|gb|AW267687.1|AW267687
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|9461361|gb|BE453695.1|BE453695
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|6021895|gb|AW066823.1|AW066823
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCCCCTTACCCCAGAAGCCAAGTAGAGTTTATTTTGGAA AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATCEST: gi|33096972|gb|CF056932.1|CF056932
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
EST: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAG AGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
genomic: GGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaa ... gtgctctcagAGGATGCAAGATGCAAACAGGGTAATGATACGAGATGGTGTTGTTCGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCATATAGATCAAATGTCAATTGATGATATCGAGCAGATGGTTAATAGGGAGTCAACTGCACCTTACACCAGAAGCCAAGTAGAGTTTATTTTGGAGgtatgaaaaaaaacaatctacttttatttcaggcctgtaacatatagctaagcatgtcgattgcattaacattctatttccttgtgctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG