1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GACAACATAGCTGCTGGTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttccactactattacagattgtttgccgcccttgttgagataagcttgtttaatgccttgtcttttgctattccag
species | Zea mays |
transcript | GRMZM2G097768_T03 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|71766861|gb|DR964798.1|DR964798
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|193503179|gb|AM937591.1|AM937591
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|67016921|gb|CO445670.1|CO445670
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|149077603|gb|EE166303.2|EE166303
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|50325332|gb|CO520458.1|CO520458
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: AGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|193503551|gb|AM937740.1|AM937740
genomic: AGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|71772625|gb|DR970553.1|DR970553
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTEST: gi|37374223|gb|CF623456.1|CF623456
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: TTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG GCATTTGTGA-TGNCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCAT
genomic: TTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTG-CATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAACATAGCTGCTGGTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttccactactattacagattgtttgccgcccttgttgagataagcttgtttaatgccttgtcttttgctattccag
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