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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcgctggttatgggcacaattgattgtgttattgttgtgtttatcagcaaaaattgatggaattcgttctgaattaccacccttcag

Basic information

species Zea mays
transcript GRMZM2G086489_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086489_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os04g55960.1 (Oryza sativa), 5'ss of exon 15
GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcgctggttatgggcacaattgattgtgttattgttgtgtttatcagcaaaaattgatggaattcgttctgaattaccacccttcag
||||| |||||  | ||||||||||| |  ||| |||||| |||| | || |||||||||||||||||||||||||||||| |  ||    | || |  ||  |   |   | ||||  |  ||||  ||        ||  ||||  || | |||||| |||| ||| |||
GAAAGATTAGCTCTAAAACAATCTGGAGTTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATGgtatgcatcaaaagata-gttcatgagatac-atattatgatcatgttgctc--------ttactggacctcat-ctgaatgaccaacctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491259|gb|BU051182.1|BU051182
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|33102735|gb|CF062695.1|CF062695
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|211465903|gb|FL134195.1|FL134195
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTTCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|211465904|gb|FL134196.1|FL134196
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTTCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|32943853|gb|CF048672.1|CF048672
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|15499663|gb|BI596176.1|BI596176
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|67026638|gb|CO455387.1|CO455387
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|60357924|gb|DN224897.1|DN224897
EST:     TGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: TGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|15632677|gb|BI679770.1|BI679770
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|211465906|gb|FL134198.1|FL134198
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTTCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|32835080|gb|CD974758.1|CD974758
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|32832265|gb|CD971943.1|CD971943
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|67033233|gb|CO461982.1|CO461982
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|19437266|gb|BM953676.1|BM953676
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|31351811|gb|CD436168.1|CD436168
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTTCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
EST: gi|32835719|gb|CD975397.1|CD975397
EST:     CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG                         GACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT
genomic: CAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATGgtaagggtcg ... cacccttcagGACTACATATATGAAGATGAGTTGCAAACTTTCCTTGAGGAGGGGGCGCTT