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GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttggttgataaaattatatgattggtccacttgaggacatgtttgtttttatcttaatccatgtgattggacgggattgtatgggtttaaatt...
species | Zea mays |
transcript | GRMZM2G085747_T04 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGNCGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|32933889|gb|CF038701.1|CF038701
genomic: TGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|71758667|gb|DR956604.1|DR956604
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|166461245|gb|EG146937.1|EG146937
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGA-TCCTCTTCCCEST: gi|211281986|gb|FL018039.1|FL018039
genomic: TTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|74232917|gb|DT640831.1|DT640831
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|29130947|gb|CB381651.1|CB381651
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATEST: gi|76919652|gb|DV167818.1|DV167818
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACAT
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|50334197|gb|CO529323.1|CO529323
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|40303330|gb|CK347717.1|CK347717
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|211050465|gb|FL475129.1|FL475129
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|213169886|gb|FM184059.1|FM184059
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: GCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|211281987|gb|FL018040.1|FL018040
genomic: GCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|4647287|gb|AI622362.1|AI622362
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|74232916|gb|DT640830.1|DT640830
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|74238357|gb|DT646271.1|DT646271
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|211326815|gb|FL454067.1|FL454067
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCMCAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|26456270|gb|CA827853.1|CA827853
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|78544875|gb|DV622373.1|DV622373
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|22819546|gb|BU499636.1|BU499636
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|30032196|gb|CB834047.1|CB834047
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|12971899|gb|BG267713.1|BG267713
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: CATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGGCGAAATTCGAAAAGGAATCCTCTTCCC
genomic: CATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttggttgataaaattatatgattggtccacttgaggacatgtttgtttttatcttaatccatgtgattggacgggattgtatgggtttaaatt
- - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA