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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattttttgttctatatgttagcatattgtgtttgtgtataatgggccttggcccatgtcttgactatatgttaatatattccctgaccattagg...

Basic information

species Zea mays
transcript GRMZM2G078576_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 5'ss of exon 16
ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattttttgttctatatgttagcatattgtgtttgtgt-ataatgggccttggcccatgtcttgactatatgttaatatattccctgaccattagg--
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ATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGgtaatgttttcctgttctctct-taggcttgtcatgtataaaagaaaatgagaataataaaacagtttggtcttaggt--atgcagcgagcgatgactaaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37377989|gb|CF625644.1|CF625644
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|71438781|gb|DR819831.1|DR819831
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|149083574|gb|EE172908.2|EE172908
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTTTCCTTCAATCCCAGCGCCATAAATTTTTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|87155515|gb|DY400304.1|DY400304
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAACGCCATAAATCTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|78111274|gb|DV529671.1|DV529671
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAGCGCCATAAATCTTTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|71759659|gb|DR957596.1|DR957596
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTTTCCTTCAATCCCAGCGCCATAAATCTTTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|22472877|gb|BU037357.1|BU037357
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAACGCCATAAATCTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|24766669|gb|CA401816.1|CA401816
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCCCCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|37376751|gb|CF624930.1|CF624930
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|148945634|gb|EC890893.2|EC890893
EST:     CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTTTCCTTCAATCCCAGCGCCATAAATTTCTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: gi|93282383|gb|EB674647.1|EB674647
EST:     CCTGAGGAATTCTTTTTCCCATATGCATGGCGCCTTGTCCTGTCACGGGG                         ATTTTCCTTCAATCCCAGCCCCATAAATTTTTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT