1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCATAGGGAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctgtttaactatgaacatactaaaagcgtgtggctccgacgagtaccatattccgtcgtgtacatcacccttgcaaagatactcctagaggctatatccaaatttctaaagcaacataacagtccttagtgaatcagtgatcactgtattttatttttattttttgccaactgcag
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|5688540|gb|AI941555.1|AI941555
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|67028320|gb|CO457069.1|CO457069
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATTAAGGCCGGCATCATCGATCCGGTGAAGGTGAEST: gi|5006206|gb|AI712268.1|AI712268
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|31997582|gb|CD661667.1|CD661667
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|76911014|gb|DV164129.1|DV164129
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|211181730|gb|FL012621.1|FL012621
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGEST: gi|211184128|gb|FL012625.1|FL012625
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGG
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|60394409|gb|DN227279.1|DN227279
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|24764724|gb|CA399887.1|CA399887
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGGCCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|149072567|gb|EE044214.2|EE044214
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGTTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|74242337|gb|DT650251.1|DT650251
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|8666121|gb|BE186937.1|BE186937
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|61118980|gb|DN559941.1|DN559941
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|71759820|gb|DR957757.1|DR957757
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|78117876|gb|DV536263.1|DV536263
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGTTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGAEST: gi|31352804|gb|CD437161.1|CD437161
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: GAAGCTGATTGAACAAGAGGGCCTCAGTTTGGGCTATGATGCAGCAAAAG GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCATAGGGAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctgtttaactatgaacatactaaaagcgtgtggctccgacgagtaccatattccgtcgtgtacatcacccttgcaaagatactcctagaggctatatccaaatttctaaagcaacataacagtccttagtgaatcagtgatcactgtattttatttttattttttgccaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA