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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAATGCCTACATTTTGTATCCCTGTCCAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtcgatattaatagttgcatatgaaaaatgtatctttgagttcttaattgattcaagtctacatttatgttattctttatataatatttgtgg...

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 15
GCGGAATGCCTACATTTTGTATCCCTGTCCAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtcgatattaatagttgcatatgaaaaatgtatctttgagttcttaattgattcaagtctacatttatgttattctttatataatatttgtgg
|||| |||||  | |||||  | |||||| |||| |||||||| |||||||| || ||||| || ||||| ||  |||| ||||||||||| ||||| ||||| ||  ||   |    | |     |  |  | ||   |   | ||   ||   | ||   |  ||  | | || |      || ||    || | | |
GCGGGATGCCAGCTTTTTGCGTTCCTGTCGAAGACGGTGGTGTGGGTTTTGACTACCGTCTACACATGGCAGTGGCAGATAAATGGATTGAGCTTCTTAAgtatgttctcaggacgtcttggcttttcagtgagattattaagtaagacgttg--ttatatgatactgaactgatatggcgtgttgta----atctctag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 15
GCGGAATGCCTACATTTTGTATCCCTGTCCAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtcgatattaatagttgcatatgaaaaatgtatctttgagttcttaattgattcaagtctacatttatgttattctttatataatatttgtgg--
| || ||||| ||||| ||||| ||||||||||||||||| ||||| ||||| || ||| | || |||||  |  | || || ||||| ||| | || |||| |||| |     |    | || | | | |      | |  || | |  ||  | ||   |||| |       |  | | ||  || | ||  | |||   
GTGGTATGCCAACATTCTGTATTCCTGTCCAAGATGGTGGCGTTGGATTTGACTACCGTTTACACATGGCCATAGCTGATAAGTGGATAGAAATGCTCAAgtgagtgttt----tctgcattttcttttaagttccatctgctttaatatttggt-gaaataagtgtct-----tactctcctccatgttatgct-gtgaag

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 15
GCGGAATGCCTACATTTTGTATCCCTGTCCAAGATGGTGGTGTTGGTTTTGATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtcgata-ttaatagttgcatatgaaaaatgtatctttgagttcttaattgattcaagtctacatttatgttattctttatataatatttgtgg-
||||||||||  |||| ||||| ||||| |||||||||||||| || |||||||||||  | ||||||||  |  | || ||||||||||| ||||| ||||| |     || |  | || ||    | |          ||||    || ||| ||  |  |     | ||| |  | |   |    |   |     ||  
GCGGAATGCCAGCATTCTGTATTCCTGTTCAAGATGGTGGTGTGGGATTTGATTATCGCTTACATATGGCCATTGCTGATAAATGGATTGAGCTTCTTAAgtaggcctctgaaaactcattgtcttctttcttcttcccctcttcatctttttattt--tctagcctcaaattaaattcaggttgagcagtgtgaagatgaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67035192|gb|CO463725.1|CO463725
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|101386689|gb|EB815361.1|EB815361
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|211410788|gb|FL280482.1|FL280482
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|27753880|gb|BM378072.1|BM378072
EST:     GATTATCGTCTTCATATGGCTGTACCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|32864974|gb|CF004656.1|CF004656
EST:     GAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|211410789|gb|FL280483.1|FL280483
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA