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GTAAAGTTTTGACTGATTTGGTTGAGGGCCTTGAGGAAGCTGATGTGACAGTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaactctgaaatgttctttggttatttcacaaggagatagcatcttttgcagaagttttctagtattgtgcacttaaacagaaacgagtatgtg...
species | Zea mays |
transcript | GRMZM2G069676_T03 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTTGAGATAAGGTYAAMGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACAEST: gi|76289293|gb|DV028861.1|DV028861
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACA
EST: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|78112841|gb|DV531235.1|DV531235
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|86465999|gb|DY232372.1|DY232372
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|60341753|gb|DN208726.1|DN208726
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATEST: gi|101389186|gb|EB816548.1|EB816548
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTAT
EST: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|20512826|gb|BQ280024.1|BQ280024
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAAATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|32928442|gb|CF033254.1|CF033254
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAAATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|32928208|gb|CF033020.1|CF033020
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAAATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAATEST: gi|32929540|gb|CF034352.1|CF034352
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
EST: GTTGAAATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGG GTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
genomic: GTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaac ... atgtctacagGTCCTTCCGTGACTATGGAGAATCCGTCTTGAGACATTTAGAGAATGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAGTTTTGACTGATTTGGTTGAGGGCCTTGAGGAAGCTGATGTGACAGTTGAGATAAGGTTAAAGATTGATCAGAATCATGCAGATTTGAAAGGAGGgtatgctaactctgaaatgttctttggttatttcacaaggagatagcatcttttgcagaagttttctagtattgtgcacttaaacagaaacgagtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagaa