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GCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgctcatcccttgcaagttgcacactggcacctataggtgtagtgtaggtgtaggcgtgtagcccacatgcatgcaatgcacgttcgtgttcttgtctctgaatccgagctgcatgcccttgctctgtgcag
species | Zea mays |
transcript | GRMZM2G065012_T03 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAGEST: gi|149102174|gb|EE287594.2|EE287594
genomic: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
EST: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAGEST: gi|71333236|gb|DR803672.1|DR803672
genomic: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
EST: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAGEST: gi|89106667|gb|DY576884.1|DY576884
genomic: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
EST: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAGEST: gi|21390315|gb|BQ528364.1|BQ528364
genomic: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
EST: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAGEST: gi|76283613|gb|DV023181.1|DV023181
genomic: CCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
EST: GATCAACAGTTCGCCAAG GTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
genomic: GATCAACAGTTCGCCAAGgttcactgct ... ctctgtgcagGTCCAGAAGGAGCTGCACCTGCCGCCAGGGGACTTCCCGAGCGTGGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgctcatcccttgcaagttgcacactggcacctataggtgtagtgtaggtgtaggcgtgtagcccacatgcatgcaatgcacgttcgtgttcttgtctctgaatccgagctgcatgcccttgctctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA