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AGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTTACAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtttcactgaggtctagtgtttatgttcatgctcgaacacggttttgtttcccataggaaagctatatcagttcactgagatttgaatgatgtgcagtagtctgatagatttgtctttgtttatgaaagtgatatctatctgatgatctgtgttcgctgttgcttgcattatag
species | Zea mays |
transcript | GRMZM2G064023_T04 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGCCATGGAGTTCTGCGCAAGACAGACCCACGGTATEST: gi|5847106|gb|AW000185.1|AW000185
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: TAAAGAGTGGAAAG GTTGTTCCTGGATTTGGCCATGGAGTTCTGCGCAAGACAGACCCNCGGTATEST: gi|67022591|gb|CO451340.1|CO451340
genomic: TAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: GATCAACTCAAAGAGTATGTCTGG-ACACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGTCATGGAGTTCTGCGCAAGACAGACCCACGGTATEST: gi|71450119|gb|DR831169.1|DR831169
genomic: GATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTATEST: gi|76284364|gb|DV023932.1|DV023932
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTATEST: gi|6952534|gb|AW424602.1|AW424602
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGCCATGGAGTTCTGCGCAAGACAGACCCACGGTATEST: gi|31361873|gb|CD446230.1|CD446230
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGCCATGGAGTTCTGCGCAAGACAGACCCACGGTATEST: gi|149082724|gb|EE171942.2|EE171942
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: GATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTATEST: gi|5915419|gb|AW053060.1|AW053060
genomic: GATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
EST: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGATTTGGCCATGGAGTTCTGCGCAAGACAGACCCACGGTAT
genomic: CAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtt ... tgcattatagGTTGTTCCTGGATTTGGTCATGGAGTTCTGCGTAAGACAGACCCACGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTTACAACGGATCAACTCAAAGAGTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatatcgtttcactgaggtctagtgtttatgttcatgctcgaacacggttttgtttcccataggaaagctatatcagttcactgagatttgaatgatgtgcagtagtctgatagatttgtctttgtttatgaaagtgatatctatctgatgatctgtgttcgctgttgcttgcattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA