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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcagtttggcgtactagatcttatctggtacaatctctgctttatgcttccttttacttgtagattttgaaaaaaaaaggtttccatcaataac...

Basic information

species Zea mays
transcript GRMZM2G064023_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcagtttggcgtactagatcttatctggtacaatct-ctgctttatgcttccttttacttgtagattttgaaaaaa--aaaggtttccatcaataac---------------------------------------------------------------------------------
|||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||| ||  | || ||||| || ||||||||||||||||||||  ||||| |||||| ||||  |||  || ||     | | |||  |  | ||| | | |   || |      || ||  | |    |                                                                                   
GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAGgtatgctcagtttgttgtactggatcttctctgccacatcctgctaaacaaggattcactgca-ttgcatactcaaaatatgtcgcagattatctttggaagaaggaacataatgttccttccatttttaaattgatattttagtgtgtgtgtgtgaactaaccatagttcacatccaatgcag

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtat--gctcagtttggcgtactagatcttatctggtacaatctctgctttatgcttccttttact--tgtagattttgaaaaaaaaaggtttccatcaataac---------------------------------------
||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||| ||| | || ||||| || ||||||||||  ||||||||||  | ||| |||||| | ||   ||  ||       | |  || ||   ||  |  | || |     | |  |  |||  ||| ||                                          
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCATTGCACGGCCTGGCTAATCAGgtatatgctcagtttgttgcactggatcttgtttgccgcatcctgctaaaaaggactcattgcgctattcaacatatgctgcagatcatttttaaatcgatttttagtttgtgtgaactgaccatagtcaacatgtaatgcag

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA15G42300.2 (Glycine max), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgt-atgctcagtttggcgtactagatc--ttatctggtacaatctctgctttatgcttccttttacttgtagattttgaaaaaaaaaggtttccatcaataac-
||||  ||| | || ||||||||||||||| | || ||||| ||| | ||||||||||||||||| || |||||  | || |||||||| ||      |||    |  || |||  || |||| |    | |||| | |   |||   | || ||     ||| |   | |||   | |    | ||||  
GTTGCTAGTCCGCTATCAGATCCTTATCTTGCATTTGCAGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTTTGGCCAATCAGgttatttgttattttattttttatatccgttttctgtt----tttctggtattaactttgctatagttcgtcttttggtttagaaatcatgtttggctataatg

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 14
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcagtttggcgtactagatcttatctggtacaatctctgctttatgcttccttttacttgtagattttgaaaaaaaaaggtttccatcaataac----------
||||  ||  | || ||||||||||||||| | || || || ||| | ||||||||||||||||| || ||||| || || |||||||     | | ||||   || | | | || ||   |    | || | ||| || |||  ||   ||  | ||||   | |    |  ||||  |  | ||           
GTTGCTAGCCCGCTATCAGATCCTTATCTTGCATTTGCGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAGg-----ttattttgt--tatttggtttt-tccttttttttttcagttttctgtttctcttgtatt--aaatttgctatagttcatctttcggttgagaaatcatgtttgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020672|gb|AW065480.1|AW065480
EST:     CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
EST: gi|71450119|gb|DR831169.1|DR831169
EST:     ATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: ATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
EST: gi|31361054|gb|CD445411.1|CD445411
EST:     CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
EST: gi|76284364|gb|DV023932.1|DV023932
EST:     CTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: CTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
EST: gi|6952534|gb|AW424602.1|AW424602
EST:     CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
EST: gi|5915419|gb|AW053060.1|AW053060
EST:     CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG                         GAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT
genomic: CAGCGGCTCTAAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGTGCTTCTATGGATCAAATCTGTAATTCAGGAAACTGGGAGTGATGTT