1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGGATTTGGTCATGGAGTTCTGCGTAGGACGGACCCACGGTATCTATGCCAAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctagatcctctctgtctaattgcatttgctttcttgagttgaacgattttagatacgatactccgtacgttacag
species | Zea mays |
transcript | GRMZM2G063909_T03 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|60357508|gb|DN224481.1|DN224481
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|78076903|gb|DV505337.1|DV505337
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|60354991|gb|DN221964.1|DN221964
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|60345083|gb|DN212056.1|DN212056
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|50331232|gb|CO526358.1|CO526358
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|40334210|gb|CK368280.1|CK368280
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAGEST: gi|60400601|gb|DN233408.1|DN233408
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATTTGGTCATGGAGTTCTGCGTAGGACGGACCCACGGTATCTATGCCAAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctagatcctctctgtctaattgcatttgctttcttgagttgaacgattttagatacgatactccgtacgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT