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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTTTAATTGGCTCTGATGATAACGAAGAGGCAAATGCTAGAAGGGAAGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggacgtacattagtctacattacattcttcttgttggtttccttgattatttatctgttattttttggttgttcacccttggaatagcag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 16
CCTCTTTTAATTGGCTCTGATGATAACGAAGAGGCAAATGCTAGAAGGGAAGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggacgt---acattagtctacattacattcttcttgttggtttccttgattatttatctg--ttattttttggttgttcacccttggaatagcag------------
|| ||| ||| ||| |||||||||||||| || |||||||||||||| |||||| |||||||| ||||| | ||||  || ||||| ||||| || || ||||||||| |     ||| || | ||||||||||| ||  | ||||  | ||   |||||||||||  | ||  | || ||   |  | |  |  |    |            
CCACTTCTAACTGGTTCTGATGATAACGAGGAAGCAAATGCTAGAAGAGAAGAGCGAGAACGAATTGCAATGGATTGCATTGCTAAATGCCAACGATCATgtatgtggccaagcaacactattttacattacatttttgctattggagttct-atttatttatctgattaatgatatgcttccccttcttctgtgtgttggtggcattagcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 15
CCTCTTTTAATTGGCTCTGATGATAACGAAGAGGCAAATGCTAGAAGGGAAGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggacgt---acattagtctacattacattcttcttgttggtttccttgattatttatctg--ttattttttggttgttcacccttggaatagcag------------
|| ||| ||| ||| |||||||||||||| || |||||||||||||| |||||| |||||||| ||||| | ||||  || ||||| ||||| || || ||||||||| |     ||| || | ||||||| ||| ||  | ||||  | ||   |||||||||||  | ||  | || ||   |  | |  |  |    |            
CCACTTCTAACTGGTTCTGATGATAACGAGGAAGCAAATGCTAGAAGAGAAGAGCGAGAACGAATTGCAATGGATTGCATTGCTAAATGCCAACGATCTTgtatgtggcctagcaacactattttacattatatttttgctattggagttct-atttatttatctgattaatgatatgcttccccttcttctgtgtgttggtggcattagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31558447|gb|CD527659.1|CD527659
EST:     AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCT                         CTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG
genomic: AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggac ... ggaatagcagCTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG
EST: gi|28576038|gb|CB281930.1|CB281930
EST:     AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCT                         CTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG
genomic: AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggac ... ggaatagcagCTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG
EST: gi|30087149|gb|CB885357.1|CB885357
EST:     AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCT                         CTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG
genomic: AGAGAGAGAACGACTTGCACTAGATTATATCGCTAAGTGCCAGCGCTCCTgtatgtggac ... ggaatagcagCTTGCAAGATGACAAACCAAATTGCTAGTTGGGATACGAGGTTTGAGTTGG