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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAATACTAGATTTAATAGTGGAGGTGCACATCGGGGAGAGACATCTGCTTCAAACTTTGGAATGGCACGCTCTTCATCCTGGCTTGATATGAATTCTGgtaagttataatcactttccttactatgtgcttggaaattgaaacatcttgctttactgggtgttcagagaaaatcaagaattgctgaatcgagtttcctgtattttgcag

Basic information

species Zea mays
transcript GRMZM2G048067_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 15
AAAAATACTAGATTTAATAGTGGAGGTGCACATCGGGGAGAGACATCTG---------CTTCAAACTTTGGAATGGCACGCTCTTCATCCTGGCTTGATATGAATTCTGgtaagtta-taatcactttccttactatgtgcttggaaattga--aacatcttgctt-tactgggtgttcaga--gaaaatcaagaattgctgaatcgagt--ttcctgtattttgcag
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---------AGACTTAGCAATGGAGGTGCACACCCAGGAGAGACATCTGTGCCCCCTTCATCAAACTTTGGAATGGCACGCTCCTCTTCCTGGTTTGATATGAACTCTGgtaggttaataatttctatccttgccaagtgcttggaggatgcctgcctttttgcatgcactacattattgtgtggggtgtaaatgattattgaattcagctctttcaatattttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30087149|gb|CB885357.1|CB885357
EST:     GATATGAATTCTG                         GAAACAAC-TGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG
genomic: GATATGAATTCTGgtaagttata ... tattttgcagGAAACAACTTGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG
EST: gi|28576038|gb|CB281930.1|CB281930
EST:     GATATGAATTCTG                         GAAACAAC-TGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG
genomic: GATATGAATTCTGgtaagttata ... tattttgcagGAAACAACTTGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG
EST: gi|31558447|gb|CD527659.1|CD527659
EST:     ATATGAATTCTG                         GAAACAACTTGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG
genomic: ATATGAATTCTGgtaagttata ... tattttgcagGAAACAACTTGATAAAATTTAGGACCCCTCCTGTTAGCCCTCCTCAGCATG