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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGTACTGCAATCTGGAAATGCTATGTTTACATGGTTTGGCAATTCTAGCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggcacctttagacagttttaagccaaccaattaaaatttcttgcatttttaagttctatgatcaattgagggttttcctcttgttcaatatcc...

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439549|gb|DR820599.1|DR820599
EST:     ACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: ACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106295|gb|FL022813.1|FL022813
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAA-GTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211541601|gb|FL022804.1|FL022804
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|213188773|gb|FM187672.1|FM187672
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106291|gb|FL022809.1|FL022809
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106290|gb|FL022808.1|FL022808
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAA-GTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106299|gb|FL022817.1|FL022817
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGGACAGAGAGTTCTGCTTT
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGG-ACAGAGAGTTCTGCTTT
EST: gi|211106292|gb|FL022810.1|FL022810
EST:     GCACATATGAGCAACAGCAGNGGGCAGC-AAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211541598|gb|FL022801.1|FL022801
EST:     GCACATATGAGCAACAGCAGTGGGCAGC-AAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106297|gb|FL022815.1|FL022815
EST:     AATTTTTGAAG                         CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|5816386|gb|AI987302.1|AI987302
EST:     ATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: ATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106298|gb|FL022816.1|FL022816
EST:     AATTTTTGAAG                         CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211106296|gb|FL022814.1|FL022814
EST:     GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG                         CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: gi|211541599|gb|FL022802.1|FL022802
EST:     AATTTTTGAAG                         CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCGTACTGCAATCTGGAAATGCTATGTTTACATGGTTTGGCAATTCTAGCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggcacctttagacagttttaagccaaccaattaaaatttcttgcatttttaagttctatgatcaattgagggttttcctcttgttcaatatcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG