1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgactggccatgcatttcctttgcagtggcttccttgtgaatttgcttattctgacaatgtgtctgttggtctcag
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GATAAGAGGAGACCAGCACGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|26456967|gb|CA828550.1|CA828550
genomic: GATAAGAGGAGACCAGCA-GCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|6031397|gb|AW076299.1|AW076299
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCATGACATCGATGGTGGCAAGEST: gi|211247979|gb|FL192072.1|FL192072
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: ACGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCATGACATCGATGGTGGCAAGEST: gi|71596396|gb|DR907147.1|DR907147
genomic: ACGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAACEST: gi|78077421|gb|DV505855.1|DV505855
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|22521339|gb|BU080150.1|BU080150
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|78119963|gb|DV538347.1|DV538347
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCCCTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|45213774|gb|CK850005.1|CK850005
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATGAGCTGAGG GCCGCACTGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAEST: gi|88750685|gb|DY534826.1|DY534826
genomic: GATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCA-TGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAA
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|109179593|gb|EC380097.1|EC380097
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|51592845|gb|CV071991.1|CV071991
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|47962266|gb|CN844975.1|CN844975
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGTACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|76281884|gb|DV021452.1|DV021452
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCTTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|78544145|gb|DV621643.1|DV621643
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|71595987|gb|DR906738.1|DR906738
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: TCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|22521338|gb|BU080149.1|BU080149
genomic: TCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: TTCGTTCGCCGAGATGAGCTGAGG GCCCCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|78109019|gb|DV527436.1|DV527436
genomic: TTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGEST: gi|62550472|gb|DN830892.1|DN830892
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgactggccatgcatttcctttgcagtggcttccttgtgaatttgcttattctgacaatgtgtctgttggtctcag
- AAGAGG
- - AGAGGA
- - GAGGAG
- - - AGGAGA
- - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - AGCTGA