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CTTGCAGTTGATATTCCAACAAGCAGCTCTAGTATACCTAGATTATCAGCCTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatccactctttatgttcattttataaaatgtcactgtgtttatttatgcattgacctttag
species | Zea mays |
transcript | GRMZM2G030596_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAG-- CA-TGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCAEST: gi|31349834|gb|CD434191.1|CD434191
genomic: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatc ... tgacctttagCAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
EST: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCA ---TGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGTGGCCAEST: gi|211528377|gb|FL093833.1|FL093833
genomic: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatc ... tgacctttagCAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
EST: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCA ---TGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCAEST: gi|78075869|gb|DV504303.1|DV504303
genomic: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatc ... tgacctttagCAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
EST: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAG-- CA-TGATTGGATTGAAGAGGAAGTTTAATCCTTTCTGTGCTGTGGCGGCCAEST: gi|78114930|gb|DV533318.1|DV533318
genomic: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatc ... tgacctttagCAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
EST: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAG-- CA-TGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
genomic: CTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatc ... tgacctttagCAGTGATTGGATTGAAGAGGAAGTTTAATCCTTTCGGTGCTGTGGCGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCAGTTGATATTCCAACAAGCAGCTCTAGTATACCTAGATTATCAGCCTCTGCAGCAAGAGAAAAGATCAGTAGTCTCGATTCTCTTCCCAAGAGCAgtgagtaatccactctttatgttcattttataaaatgtcactgtgtttatttatgcattgacctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA