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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAGgtatgtctgtatagacaatctgttttttttagtttctgccatttctgcttatttatctgacaccatgctgcag

Basic information

species Zea mays
transcript GRMZM2G030144_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 15
CCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGG---CAAACTTTAGCCTTCCTGGCATAGgta----tgtctgtatagacaatct----gttttttttagtttctgcc-atttctgcttatttatct-gacaccatgctgcag
   ||  ||||||| || |||||||||||||||||||| |||||||| ||| | ||||||||||| |||||||| |   |||||||||||||||||||   |||||    |     |   || ||| |     | ||||| |  |  |||  ||    ||||| ||||||  | ||||||| |   
---TCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAGgtaaaagttatcatgatgataatatttgcatgtttttcatatgttgctgatccaagcttacttatcttaataccatgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91876800|gb|EB406757.1|EB406757
EST:     TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAG                         AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
genomic: TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAGgtatgtctgt ... catgctgcagAGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
EST: gi|71433259|gb|DR814309.1|DR814309
EST:     TTAGCCTTCCTGGCATAG                         AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
genomic: TTAGCCTTCCTGGCATAGgtatgtctgt ... catgctgcagAGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
EST: gi|67021834|gb|CO450583.1|CO450583
EST:     TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAG                         AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
genomic: TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAGgtatgtctgt ... catgctgcagAGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
EST: gi|88751809|gb|DY535950.1|DY535950
EST:     TTCTGTACAAAATGGACCACCAACGGAAAACTTTACCCTTCCTGGCATAG                         AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
genomic: TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAGgtatgtctgt ... catgctgcagAGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
EST: gi|67037313|gb|CO464163.1|CO464163
EST:     TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAG                         AGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT
genomic: TTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCCTGGCATAGgtatgtctgt ... catgctgcagAGACTAAATCTGTCGCTGTTACACCTCAAGTTGTGGATCTTCTTGATGGTT