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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAGgtaccattgccatagagcttcactgttcattgtcatatatacaaactgacaaagtgttgtaaacctgtaatttctacttgatcatctaagactaagatgccacttcttag

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os10g11140.1 (Oryza sativa), 5'ss of exon 15
GGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAGgtaccattgccatagagcttcactgttcattgtcatatatacaaactgacaaagtgttgtaaacctgtaatttctacttgatcatctaagactaagatgccacttcttag
|| || || |||||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||||||||  ||| ||  ||  | || ||| |||  |  | | | |||| |    ||      ||  ||  |   |||||   || || ||||||| |    | |||||   ||
GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAGgtacttttgtcagtgaattgca-tgtgcatgatt-tgtttgcaaaatagtcaa------taggcc-atggcttctagaagaacagctaagacaatatggtcactttgcag

upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 15
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 15
GGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAGgtaccattgccatagagcttcactgttcattgtcatatatacaaactgacaaagtgttgtaaacctgtaatttctacttgatcatctaagactaagatgccacttcttag
|| || ||  | || ||||| || ||||||||||||||||||||||||||||| |||||  |||| ||||| |||||  ||      |    |  ||    |  ||   |  | | ||| | || ||| |  |   |   |  | ||| |     | || ||   |       |           
GGGCTGGCACGTTCTATGCCGACAAGTGGTGCTCTTGATCGTGTTGCCGAGAAGTTGAAGCTTCCTTTCTTCGAGgt-tcaccctttttagtcaacagatgtattttctaggtttgcaaccagataaaat--taggaggataaactttttgacaaagcaacttgtatgttttag-----------

upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 15
GGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAGgt--accattgccatagagcttcactgttcattgtcatatata-----------caaactgacaaagtgt-tgtaaacc--tgtaatttctacttgatcatctaagact---aagatgccacttcttag------
||  | ||  |||| |||||||| ||||||||||||||||||||||| || ||||||| | ||||||||||||||||  | |  | |  ||    ||    ||  |||  |||  | |            ||| ||  || || | | |  |      || ||    | | |  | ||| | |    |  ||| |  ||||| |      
GGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAGgtgaagcccttctgtactaatttgtcgtg-attaacatggaaaactgtcttgcttaaaatggaaaggtttatatccattgacatacttctctcctaacaaactatgtccttaacaatgactattcttggtttcag