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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTCGATGCTGGGGCTGCTAAGGAGCTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaactttttcaaatgtacaggaatctcaaacttgaactttttagaaccatgtccaagtactcccgtgtatatatcaacttcagaaaattatgatagtactcccgtgtatatatcaattcaagcaatcgcaaacttgaactttttagaaccatgtctaaagtatctctttgtcag

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 15
AATGTCGATGCTGGGGCTGCTAAGGAGCTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaactttttcaaatgtacaggaatctcaaacttgaactttttagaaccatgtccaagtactcccgtgtatatatcaacttcagaaaattatgatagtactcccgtgtatatatcaattcaagcaatcgcaaacttgaactttttagaaccatgtctaaagtatctctttgtcag
||||| |||||||| |||||||| || || ||||||||||| || ||||||||||| || |||||||||||||||||||| ||  |   ||  | ||   |          |    | ||   ||    | | ||    || | ||    || ||| |||  || |   ||| |  ||| |                                                                             
AATGTTGATGCTGGAGCTGCTAAAGAACTTATGGCAAACCTTGTCAGCATGCAGTCGTCCCTTTCTGATGTTAACAAgtacgtacattgttcactaacccatgatttagggagcgatcaatacttcgccagc-tgctatagaaatca---gtctatttcattttaaatgaatga--ataattt---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108858|gb|DV527275.1|DV527275
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|71426274|gb|DR807324.1|DR807324
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|5296174|gb|AI782854.1|AI782854
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211541121|gb|FL006422.1|FL006422
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32906153|gb|CF010966.1|CF010966
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|5895776|gb|AW037022.1|AW037022
EST:     AGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|78024768|gb|DV493155.1|DV493155
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|31357336|gb|CD441693.1|CD441693
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67020139|gb|CO448888.1|CO448888
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32914018|gb|CF018830.1|CF018830
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTTTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211190026|gb|FL186116.1|FL186116
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149060808|gb|EE157260.2|EE157260
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|44900765|gb|CK827310.1|CK827310
EST:     CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTGATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtggaa ... tctttgtcagGTTGATCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA