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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTGGTCAGCGGAATCGCTGTACTATAATCCAGCTTGGCACATCATTGTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAGgtagtctccttgctcctaactgtatatattggcatgctactctgtctgactaaagccctgtttagaagcatccagattttaagaaactggtttatatata...

Basic information

species Zea mays
transcript GRMZM2G019361_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 16
TGTTCTGGTCAGCGGAATCGCTGTACTATAATCCAGCTTGGCACATCATTGTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAGgtagtctccttgctcctaactgtatatattggcatgctactctgtctgactaaagccctgtttagaagcatccagattt-taagaaactggtttatatata
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TGTTCTGGTCAGCAGAGTCATTGTACTATAATCCAGCTTGGCACATCATTGTCTCTTCGTGGGAAACTATCGTATATAGCCCCATTCTCGATCTGGACAGgtagccttcttgctccaagctt---------gcacgcgtaattatcagcttacatgtcattcttgtattaatcagttccgtcatgcaatgttttatgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20512947|gb|BQ280133.1|BQ280133
EST:     GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAG                         ATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG
genomic: GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAGgtagtctcct ... ctttgcacagATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG
EST: gi|78115355|gb|DV533743.1|DV533743
EST:     GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAG                         ATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG
genomic: GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAGgtagtctcct ... ctttgcacagATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG
EST: gi|91050204|gb|EB160622.1|EB160622
EST:     GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAG                         ATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG
genomic: GTTTCTTCCTGGGAAACCATCGTGTACAGCCCAATTCTTGATCTGGACAGgtagtctcct ... ctttgcacagATGGGCCGTCCCAATTGTCATAATGCTATTATTTGGGGTTCTTTACTGGAG