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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtttgtttctgccctcattttgtaatgatagaagtgtgcgattgccttgccttgttgtcaaactttatttcttgggattatatttttaagatc...

Basic information

species Zea mays
transcript GRMZM2G017086_T03
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 15
GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtttgtttctgccctcattttgtaa------tgatagaagtgtgcgattgccttgccttgttgtcaaactttatttcttgggattatatt-----tttaagatc---------------------------------------------------------------------------------------
|| ||||| || |  ||||||||||||||||| ||||| |||||||||||||||| ||| | |||||  || |||| |  |      | | | |  ||| |  ||   ||| |   | ||     |||  | | |   ||||| ||     | ||   |                                                                                        
GGTTCATCAAGCAATGCTGGGGAATCATCCAGCATGGATATTGACAAAGgcaagtagttggcttctgttcttatttagagaaatagctcagatacttgtactctttgtttgtcaaatggtggggtttttctgcctcttattatgttagggttctagtgtatctattcaagtagcatgctgcgacccatacttcaatactttcaatctggttagctttatgcttagctgtgttgtgtgtttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5901176|gb|AW042276.1|AW042276
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|12968043|gb|BG264990.1|BG264990
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCG
EST: gi|5296339|gb|AI783109.1|AI783109
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|5932702|gb|AW057063.1|AW057063
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG