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CAAGAACAGCCCTTGCATACGGAAAGCATGCCACTTCATATTGTCGAAGCAGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatattttgtttcacttcatattttgaatccttgttgaagatactagcaataaattgacacatgatatgaatctgtgcgttctaactacgctcatttaatttgttctcaatatgcctttagtctcaagtccctagcgagtcataggtagaatatctttgaacttaccttttcccaccatgcaatcctaaatag
species | Zea mays |
transcript | GRMZM2G006937_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGGEST: gi|4681216|gb|AI629886.1|AI629886
genomic: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
EST: AAGTCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGGEST: gi|33099602|gb|CF059562.1|CF059562
genomic: AAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
EST: ACTGGTGGATGGGGAGAAAGCCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGGEST: gi|32863035|gb|CF002717.1|CF002717
genomic: ACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
EST: AGCTCAGTACTGGTGGATGGGGAGAAAGCCATATCGTTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGACEST: gi|211245891|gb|FL430652.1|FL430652
genomic: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGAC
EST: AGCTCAGTACTGGTGGATGGGGAGAAAGCCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGMCCGTGCTCACGCTGTGAATACCGCCTGGEST: gi|166657991|gb|EG244196.1|EG244196
genomic: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
EST: AGCTCAGTACTGGTGGATGGGGAGAAAGCCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGEST: gi|211357851|gb|FL385254.1|FL385254
genomic: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAG
EST: AGCTCAGTACTGGTGGATGGGGAGAAAGCCATATCGCTATTGAAACTCAG GTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
genomic: AGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatat ... tcctaaatagGTGTATGTAAATCTCAAAGGTGACCGTGCTCACGCTGTGAATACCGCCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAACAGCCCTTGCATACGGAAAGCATGCCACTTCATATTGTCGAAGCAGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatattttgtttcacttcatattttgaatccttgttgaagatactagcaataaattgacacatgatatgaatctgtgcgttctaactacgctcatttaatttgttctcaatatgcctttagtctcaagtccctagcgagtcataggtagaatatctttgaacttaccttttcccaccatgcaatcctaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA