1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TCTCATGAATATTGCTATGACTACTCTTAGTTCAAAAATACTTTCCCAAGACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaatggtttaatgagagttagttacatggttattaaggtgccactaaagtgacacctaagcagtacgacgagccttgccgtgtaagacgtcctg...
species | Zea mays |
transcript | EF517601.1_FGT012 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|18385234|gb|BM418433.1|BM418433
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|33093405|gb|CF053399.1|CF053399
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|32944873|gb|CF049692.1|CF049692
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|33094530|gb|CF054524.1|CF054524
genomic: ACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGTAGTANCTEST: gi|18384285|gb|BM417484.1|BM417484
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|32932130|gb|CF036942.1|CF036942
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|19821794|gb|BQ047818.1|BQ047818
genomic: ACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|22819752|gb|BU499842.1|BU499842
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGG-GTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|17970295|gb|BM277058.1|BM277058
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|33093018|gb|CF053012.1|CF053012
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|87152447|gb|DY397236.1|DY397236
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|19822007|gb|BQ048031.1|BQ048031
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGTGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|32943225|gb|CF048044.1|CF048044
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|32910447|gb|CF015259.1|CF015259
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|18384286|gb|BM417485.1|BM417485
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|32930671|gb|CF035483.1|CF035483
genomic: ACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCTEST: gi|33094985|gb|CF054979.1|CF054979
genomic: TACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
EST: GTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAG GGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
genomic: GTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaat ... atggtggcagGGTAGCACCAACTTGGAATCTATTCAAATTCTGAAGAAACCTGGAGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCATGAATATTGCTATGACTACTCTTAGTTCAAAAATACTTTCCCAAGACAAGGAGTACTTCGCTGAACTTGCGGTTGATGCTGTCTTGAGGCTTAAGgtatacaaatggtttaatgagagttagttacatggttattaaggtgccactaaagtgacacctaagcagtacgacgagccttgccgtgtaagacgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG