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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaacaacctatatatatatacacacacgctgttactgcaataagagcatgtagatgatgcagatctgaatgggaggttagaaagggattgtgattaatctaacccccattgatatgtgtatgcatgcatgtag

Basic information

species Zea mays
transcript GRMZM5G877788_T03
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337159|gb|CO532285.1|CO532285
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|211451241|gb|FL460010.1|FL460010
EST:     GTTYTCGTGGGCACAGAAGCGCCAGCAWGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|6021969|gb|AW066897.1|AW066897
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|211396502|gb|FK986087.1|FK986087
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTG
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTTTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|76018157|gb|DT945327.1|DT945327
EST:     GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTTTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|78123316|gb|DV541700.1|DV541700
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|74243543|gb|DT651457.1|DT651457
EST:     GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTTTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|149077505|gb|EE166202.2|EE166202
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|74233874|gb|DT641788.1|DT641788
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|94474394|gb|EB703352.1|EB703352
EST:     GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG                         GTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTTCAG                         GTGACCAGATGGTGTTTTTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG
genomic: GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaac ... atgcatgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGgtaattaaacaacctatatatatatacacacacgctgttactgcaataagagcatgtagatgatgcagatctgaatgggaggttagaaagggattgtgattaatctaacccccattgatatgtgtatgcatgcatgtag

- - - - - - - AGAAGC