1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGGCTTTGCTCATGGGACCCACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttctgacagttttacatactggattaagaactaacctgcttcatgaccttcgtaccttaccatcattgtgctttgcag
species | Zea mays |
transcript | GRMZM5G864414_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCAEST: gi|13198636|gb|BG354438.1|BG354438
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCAEST: gi|13198689|gb|BG354491.1|BG354491
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCAEST: gi|111433841|gb|EE298127.1|EE298127
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: ACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTAGNNTTCGG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCEST: gi|71448844|gb|DR829894.1|DR829894
genomic: ACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCT-TCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGC
EST: GGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCAEST: gi|32838225|gb|CD977903.1|CD977903
genomic: GGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCAAAAAATCTACTGGATATGCAEST: gi|71417221|gb|DR803973.1|DR803973
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
EST: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAG CCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
genomic: CACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttc ... tgctttgcagCCATGCTTCTATGTCCCACCTTCACTTCGCTTCAAATCTACTGGATATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTTTGCTCATGGGACCCACGAAGAAGGCCAACAGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGgtcatacttctgacagttttacatactggattaagaactaacctgcttcatgaccttcgtaccttaccatcattgtgctttgcag
- - - - - - - - - - CGAAGA
- - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG