1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ACACGGGCTCGTGCTAGCTAGCTCGACACAGAACAGCAAACCTCAGCACTTAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagccttgtgcatctgagacgttcgagctcagcattctcttgtggtttcttgcatgatgctcttcacgcagggaaatattcgttcgttctcttttcgtgcaaacag
species | Zea mays |
transcript | GRMZM5G846548_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|74241555|gb|DT649469.1|DT649469
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|74233513|gb|DT641427.1|DT641427
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|74246072|gb|DT653986.1|DT653986
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTGGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|60397357|gb|DN230173.1|DN230173
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|60357446|gb|DN224419.1|DN224419
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|18649152|gb|BM497971.1|BM497971
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|18648892|gb|BM497711.1|BM497711
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|5668511|gb|AI932026.1|AI932026
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTTEST: gi|71419948|gb|DR804950.1|DR804950
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
EST: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATTTCGAAG CTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
genomic: TAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagcctt ... gtgcaaacagCTGCAGACTGAAGGTTACTCGACGGAACGCCTTCTGTCGCATTCGATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACGGGCTCGTGCTAGCTAGCTCGACACAGAACAGCAAACCTCAGCACTTAGAGGCCCGTCGATGGATGGACGAGATGTATACCAGTTTTATCTCGAAGgtaaagccttgtgcatctgagacgttcgagctcagcattctcttgtggtttcttgcatgatgctcttcacgcagggaaatattcgttcgttctcttttcgtgcaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG