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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgattgcctgaaaacttgacgtagagcgctcttgttttgacttttgaggaaggatggtgcttatgtttctgagcagattgtcatcttgttgtccatgggagcttatggcatcttgttaatctgtggtttag

Basic information

species Zea mays
transcript GRMZM5G846339_T02
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148929009|gb|EC874209.2|EC874209
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|148950257|gb|EC895809.2|EC895809
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|148945517|gb|EC890762.2|EC890762
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGCCCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|211435723|gb|FL461646.1|FL461646
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|211015300|gb|FL437092.1|FL437092
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|12046797|gb|BF728936.1|BF728936
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGTGTTTTGTTCCAGACCAGGATGGC
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGG-GGCATGTTCCAGACCAGGATGGC
EST: gi|149070556|gb|EE158958.2|EE158958
EST:     GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
EST: gi|37399165|gb|CF636908.1|CF636908
EST:     GGGCAGTCAGAAAACGGAAGGGTGCCATGGGAAGGG                         GTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG
genomic: GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGgtacgttgat ... tgtggtttagGTGAGGGCGCGGTGCAGGAAGGAATGGGGCATGTTCCAGACCAGGATGGCG