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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCCAGTACAGACTACTTgtaagtaacccacaactttgtagtctatcccgatttaagcaataagaatgtgacatctcacatgctatctatgtgtaataaactatttag

Basic information

species Zea mays
transcript GRMZM5G837018_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G837018_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 5'ss of exon 14
TGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCCAGTACAGACTACTTgtaagtaacccacaactttgtagtctatcccgatttaagcaataagaatgtgacatctcacatgctatctatgtgtaataaactatttag
|||||||||||  || |||||||| |||||||| || || |||| ||||||||||||||| | ||||||||| ||||||||||| ||||||||||| ||||| ||||||| || || || |||| | |     |       |||| | | ||| |   ||||  ||   ||||  ||||      |||||
TGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTgtgagtaacc-accacattttagtatgttttcctc------ataatagt-tgatactccacaatctgcttatggataatgtgtgttttag

upper sequence: GRMZM5G837018_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv07s0205g00140.t01 (Vitis vinifera), 5'ss of exon 14
TGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCCAGTACAGACTACTTgtaagta-acccacaactttgtagtctatcccgatttaagca-ataagaatgtgacatctcacatgctatctatgtgtaataaactatttag---------
|||||  |  ||  | || || ||  | |||||||| || ||||| ||||| |||||||| ||||||||| ||||||||||||| || ||||| || || ||||||| |   |   || | |  | | |    |   ||  |  ||| | |     |  | | ||||| |  || |   | |     |||           
TGAGAAGCAAAGATGCCAGCTTCAAAACATGATTGATGAAGCCATTAGTAATAATGGCAACAAAACCTACTTGCACATTCTCAGTCAATACAGGCTCCTGgtaagtagatataaggctgttttctttctatataccaaaatatgtaatagtcctgaaattta-atgctgtgaatttagcaaatttggtttcagtatgaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928858|gb|CF033670.1|CF033670
EST:     ACAGACTACTT                         GGAATGACTAACGCTGAACTTCAAATTGAGATGGCTATGCGGGATCAAGTT
genomic: ACAGACTACTTgtaagtaacc ... aactatttagGGAATGACTAACGCTGAGCTTCAAATTGAGATGGCTATGCGGGATCAAGTT
EST: gi|32929234|gb|CF034046.1|CF034046
EST:     ACAGACTACTT                         GGAATGACTAACGCTGAACTTCAAATTGAGATGGCTATGCGGGATCAAGTT
genomic: ACAGACTACTTgtaagtaacc ... aactatttagGGAATGACTAACGCTGAGCTTCAAATTGAGATGGCTATGCGGGATCAAGTT
EST: gi|32929010|gb|CF033822.1|CF033822
EST:     GTACAGACTACTT                         GGAATGACTAACGCTGAACTTCAAATTGAGATGGCTATGCGGGATCAAGTT
genomic: GTACAGACTACTTgtaagtaacc ... aactatttagGGAATGACTAACGCTGAGCTTCAAATTGAGATGGCTATGCGGGATCAAGTT
EST: gi|32929217|gb|CF034029.1|CF034029
EST:     ACAGACTACTT                         GGAATGACTAACGCTGAACTTCAAATTGAGATGGCTATGCGGGATCAAGTT
genomic: ACAGACTACTTgtaagtaacc ... aactatttagGGAATGACTAACGCTGAGCTTCAAATTGAGATGGCTATGCGGGATCAAGTT
EST: gi|32928591|gb|CF033403.1|CF033403
EST:     ACAGACTACTT                         GAAATGACTAACGCTGAACTTCAAATTGAGATGGCTATGCGGGATCAAGTT
genomic: ACAGACTACTTgtaagtaacc ... aactatttagGGAATGACTAACGCTGAGCTTCAAATTGAGATGGCTATGCGGGATCAAGTT