1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TAGAGAAAGCTTAATTGTTGCTGCGAGCAATCGCTTTTTCACTCTTATCCCTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAAgtatgtgctcattacctaattgtattcctgtaaattggaagaagcattcaatggctcctattgtattttttaattcatgttaacttcttcaaatggatta...
species | Zea mays |
transcript | GRMZM5G831712_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGATGATTTGATGATCAAA GCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGATAGTTEST: gi|60345790|gb|DN212763.1|DN212763
genomic: GGATGATTTGATGATCAAAgtatgtgctc ... ttttgtacagGCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGATAGTT
EST: CTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAA GCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGATAGTTEST: gi|6021377|gb|AW066305.1|AW066305
genomic: CTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAAgtatgtgctc ... ttttgtacagGCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGATAGTT
EST: CTTCTATT-ATNCTCATATTATACGGGATGAGGATGATTTGATGATCAAA GCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGA
genomic: CTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAAgtatgtgctc ... ttttgtacagGCGAAAATGCTTGAAGCTCTGCAGGATATTGAAATTGCTTCAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGAAAGCTTAATTGTTGCTGCGAGCAATCGCTTTTTCACTCTTATCCCTTCTATTCATCCTCATATTATACGGGATGAGGATGATTTGATGATCAAAgtatgtgctcattacctaattgtattcctgtaaattggaagaagcattcaatggctcctattgtattttttaattcatgttaacttcttcaaatggatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagca