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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa...

Basic information

species Zea mays
transcript GRMZM5G824405_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 20
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatat-atgtttacttgtgcaatcttaaa-
|| |||||  | ||  | ||||| |||||||||||||||||||| ||||| |||||| | || || ||| || | ||| |    |   ||    |  ||      | | | || ||  |   |  |||  ||     | |  |     | || |  |||  | ||  | | |  |  
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaa--tgttttatttcattgaacataattatttcggatagttcattatctagttgactagtgtaagagattacatttgatagtttattgtctata

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 14
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa--
|| |||||  | || |||||||| |||||||||||||||||||||||||  |||||  | || || ||| || | ||| |  |  ||| | || |    ||| |  | ||   |     |    | || | |     ||||     |||  ||   || |  ||   ||  |     
GTTTATGAGACCGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAgtaag-gtttacatttaattatgtcat-tttatgtggcaaactgaaccattttacataaatcattgtctggttagctagtattgcaagtttgataattggta

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 16
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaa----cagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa
|| |||||  | ||  | ||||| |||||||||||||||||||| ||||| |||||| | || || ||| || | ||| |    |      | |  | ||   ||| | ||  ||||      |      |||  | |  | |||      |  |   | || | | || ||  |||  
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagctcaatgttttatttcattgtttcat-tgaacataatcctttta-cgtagttcattatcttgttggc-tagtgcaagagattgcatttgaaagtttat-

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 22
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa-------
|| |||||  | || |||||||| |||||||||||||||||||||||||  |||||  | || || ||| || | ||| |  |  ||| | || |    ||| |  | ||   |     |    | || | |     ||||     |||  ||   || |  ||   ||  |          
GTTTATGAGACCGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAGTAAG-

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 15
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatat-atgtttacttgtgcaatcttaaa-
|| |||||  | ||  | ||||| |||||||||||||||||||| ||||| |||||| | || || ||| || | ||| |  | ||   |  | |         | || || | |  | ||||| |||  ||     | |  |     | || |  |||  | ||  | | |  |  
GTTTATGAGACAGTTAATGAAGGATCTTACATAAAAATGATTGATATGGTCAGTGGGCATGGTGGACAAATACAAgtaagc-tcaatgttttatttcattgaacataattattttggatagttc-attatctagttgactagtgtaagagattacatttgatagtttattgtctata

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 14
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaa--aagtaatatcaaaagttctattccctgtgctattg-ctactttatatatgtttacttgtgcaatcttaaa--
|| |||||  |||| |||||||| |||||||||||||||||||||||||  |||||  | || || ||| || | ||| |  |  ||| | || |    ||| | |  | | ||  | || | || ||   | |     |||| ||  |||     | ||| |  ||   ||  |  |  
GTTTATGAGACGGTAGAAGAAGGATCTTACATAAAAATGATTGACATGGCCAGTGGACATGGAGGGCAAATACAAgtaag-gtttacatttaattatgtcattttatgaggcaaactgaacaatttta---cataaatcattgtctggtttgctggtattt-caagtttgataattgata

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 14
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgct-actttatatatgtttacttgtgcaatcttaaa--------------------------
|| ||||| || || ||||||||||| ||||| ||||||||||| ||||| |||||||| || || ||  || | ||| || |           ||  | ||  ||  |   | ||| | |  ||||| | | |  | ||  | ||  |||     || |   || | |   |  |                          
GTTTATGAGCCTGTAGAAGAAGGTTCGTACATCAAAATGATTGATATGGTCAGTGGGAACGGTGGACAGATACAAgtacgtctctgtctgtttctgtaaaattaaattggcgtttcacatgg-ctatttcatctagtcttaatcacgatatggtacttgatcggttcgactgttcatgactgttattctacttttgttgcag

upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 12
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 14
GTCTATGAACCGGTGGAAGAAGGTTCTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatgaacagtcaagtgacacatgtaaaagtaatatcaaaagttctattccctgtgctattgctactttatatatgtttacttgtgcaatcttaaa----
|| ||||| || ||||||||||| |||||||| ||||||||||| |||||| ||||  | |  || ||  || ||||| || | | |  | || |||   |   | |  |  | | ||   || | | |  |  | | |    | |  || | ||  ||| | | | || ||       
GTTTATGAGCCAGTGGAAGAAGGCTCTTACATCAAAATGATTGATATGGTTGGTGGCCAAGATGGACAGATACAGgtaagtttcacctcttaaatgattaacagagacatgcttttaa---ttatgtact-taaggtttactaagtgcatgtttggatacatttcctattttttggttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|84980594|gb|DW530943.1|DW530943
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
EST: gi|211189269|gb|FL030572.1|FL030572
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
EST: gi|67010650|gb|CO439399.1|CO439399
EST:     CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAG                         ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
genomic: CTTACATAAAAATGATTGACATGGTTAGTGGGAAGGGGGGCCAACTAAAGgtatgtatga ... tttcgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG