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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaactaataacagttactaattttacatatttcgccgtgggaatgcatgaaagggttttatgttgctgttctgtctgttacag

Basic information

species Zea mays
transcript GRMZM5G801369_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801369_T03 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g68260.1 (Oryza sativa), 5'ss of exon 13
GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaactaataacagttactaattttacatatttcgccgtgggaatgcatgaaagggttttatgttgctgttctgtctg--ttacag----------
|||| ||| |||||||||| | |||||||||||||||||||||| ||   |    || ||   ||  |||  |  ||  |    |||||||||         |       | || | ||  |  ||           
GGCACGGCTGAGAATGGAAGAACACCATGGGAAGGGgtaagctagctctgatgtattcctcgcttctcat-ctgggcatttccgatgcatgaattctagacttaacaacatcctatatgaatcgcaaccatccgcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56461966|gb|CK986264.1|CK986264
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|4621622|gb|AI612455.1|AI612455
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|32838018|gb|CD977696.1|CD977696
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|78120790|gb|DV539174.1|DV539174
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|32837052|gb|CD976730.1|CD976730
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|6021059|gb|AW065987.1|AW065987
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGNTCCAAACAAGGGTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|6601788|gb|AW256229.1|AW256229
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAANCAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|211502844|gb|FL437375.1|FL437375
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|32917091|gb|CF021903.1|CF021903
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|211325390|gb|FL371043.1|FL371043
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|18164577|gb|BM334416.1|BM334416
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|50331568|gb|CO526694.1|CO526694
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|32838737|gb|CD978418.1|CD978418
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|32832999|gb|CD972677.1|CD972677
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
EST: gi|12973204|gb|BG268364.1|BG268364
EST:     GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGG                         GTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT
genomic: GGCAAGGCAGAGAATGGAAAAGCACCATGGGAAGGGgtaagctaac ... tctgttacagGTTAGAGCACGCTGTCGTAAAGAATGGGGGATGTTCCAAACAAGGTTGACT