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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattctttgttcttttttacaccgtcctcatttatgaccttactaaaaaatcgtatttatccttctacag

Basic information

species Zea mays
transcript GRMZM2G466281_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 14
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattctttg-ttcttttttacaccgtcctcatttatgaccttactaaaaaatcgtatttatccttctacag-------------------------
|| |||||||||||||||||||| |||||||| ||||| ||| |||| |||||||||||||||||  |||| |   || | |  |  ||||||| || | |||| ||||  | |   | |  |   ||  |  | | || || |||  |  ||                            
GGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcct---aatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgata-cgcatatattttgttatgattaaacattgtgcctccctttgcag

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattcttt----gttcttttttacaccgtcctcattta-----tgacctt-actaaaaaatcgtatttatccttctacag
||||| |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||  | ||||     ||  |||||  |    | | ||||      || || | | || ||||   |    |  |    |   
GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat--

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 15
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaat----cattctttgttcttttttacaccgtcctcattta-tgaccttactaaaaaatcgtatttatccttctacag---
|| || |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||    ||||||   ||  |||||  |    | | ||||  |     | |   |  ||   |  |||      |||    
GGGAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctgtgttacttgaattttacattctgaattacttttttgagatgcttgatttggttgttgtccctcattataaaacctatgaaaacacaatga

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT3G25585.4 (Arabidopsis thaliana), 5'ss of exon 13
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatca--ttctttgttcttttttacaccgtcctcatttatgaccttactaaaaaatcgtatttatccttctacag
|||||||||||||| |||||||| ||||| ||||| || || |||||||||   ||||| ||||||         |||| ||||| |  |||||  | ||   | | |  ||  || |   || ||| |||||         ||    |||  ||||
GGAAGAATGATTCTAGCTCACTTATGTGACGAACCAAAAGGATTGAAAACAAACATGTGTATGgta---------aaagtccaataactttcttcttgctcgatcaaaatgttttcttcgttgtcctcactaa-------ctttctctcttgcacag

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattctttgttcttttttacaccgtcctcattt--atgaccttac--taaaaaatcgtatttatccttctacag
|||||||||||||| ||||||||||||||||| || || ||  | ||||||   ||||||||||||  | |    ||       |      ||  ||  | ||||    | ||  |||  |  |  | ||  |   ||||| | ||  ||    | |||
GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgtaaat-ccgataattttttcttgccaatttctccgtcttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 15
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattcttt-gttcttttttac-accgtcctcatttatgaccttactaaaaaatcgtatttatccttctacag------
||||| ||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||  |  |     | ||  |  ||| ||  ||| | |   ||    |||    | | |  || | |        |  |      |  |  |        
GGAAGGATGATTCTGGCACACTTGTGTGATGAACCCAAGGGCTTGAAAACTGGAATGTGCATGgtatgttgtattctaaccagacaattattgagttatctgccactgtggtctctctcttttcccctccctctggcccccacacgcgccccccccctttccc

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: PP1S68_234V6.1 (Physcomitrella patens), 5'ss of exon 14
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtactt----gcttggaaagcccaatcattctttgttcttttttacaccgtcctcat-ttatgacctt-actaaaaaatcgtatttatccttctacag-----
||  |  | ||||| |||||||||||||||||||||||||||||||| || || ||||||| ||||| |    | |   ||| |  ||||   | | || |    | ||    |  ||||  | |    || ||||  | ||  |   ||   | | | ||     
GGTCGGCTAATTCTTGCTCACTTGTGTGATGAACCCAAGGGTTTGAAGACTGGAATGTGCACGgtacgtcgccgttcttaaacctaaatcg--catagtccaacatcacgtatttgtcatgctgtcttgttcactaggagatactggctaatat-caagagaaagc

upper sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
lower sequence: PP1S269_30V6.2 (Physcomitrella patens), 5'ss of exon 14
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtactt----gcttggaaagcccaatcattctttgttcttttttacaccgtcctcatttatgaccttactaaaaaatcgtatttatccttctacag------
||  || | ||||| || ||  | |||||||||||||| |||||||| ||||| ||||||| ||||  |    | ||  ||| |  ||| |     ||       | |  ||  |   | ||  |  ||  ||||    |  ||  | |  |   |         
GGCCGACTAATTCTTGCACATCTATGTGATGAACCCAAAGGTTTGAAGACAGGAATGTGCACGgtaagttgcagtttctaaacctgaattacctagtgcaaggcgtcattccagctgtagttcagttct--ctaatgggtgttagctgttttaaaatgattactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075136|gb|EE163629.2|EE163629
EST:     TGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATG                         TCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTT
genomic: TGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgctt ... ccttctacagTCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTT
EST: gi|24934262|gb|CA452480.1|CA452480
EST:     TGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATG                         TCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTT
genomic: TGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgctt ... ccttctacagTCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTT